RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TRMT5Q32P41 509 aaKnown RBP11.72□□□□□ -0.53
CLK3-224ENST00000568605 NDUFAF6Q330K2 333 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 EEF1A1P5Q5VTE0 462 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 OR2A2Q6IF42 318 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 C3orf33Q6P1S2 294 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 ESPNLQ6ZVH7 1005 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 SPATA21Q7Z572 469 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 KRT73Q86Y46 540 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 CCDC71Q8IV32 467 aaPredicted RBP11.72□□□□□ -0.53
CLK3-224ENST00000568605 PCYOX1LQ8NBM8 494 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 ZNF563Q8TA94 476 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 GPR119Q8TDV5 335 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 WNT2BQ93097 391 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 UCN2Q96RP3 112 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 CPPED1Q9BRF8 314 aaPredicted RBP11.72□□□□□ -0.53
CLK3-224ENST00000568605 THUMPD3Q9BV44 507 aaKnown RBP11.72□□□□□ -0.53
CLK3-224ENST00000568605 SPATA5L1Q9BVQ7 753 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 QRSL1Q9H0R6 528 aaKnown RBP11.72□□□□□ -0.53
CLK3-224ENST00000568605 SAR1AQ9NR31 198 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 CLCF1Q9UBD9 225 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 Q9UFV3 132 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 ZNF232Q9UNY5 417 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 ANGPT4Q9Y264 503 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 IFT52Q9Y366 437 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 ZNF175Q9Y473 711 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 SPIN1Q9Y657 262 aaPredicted RBP11.72□□□□□ -0.53
CLK3-224ENST00000568605 PKDREJQ9NTG1 2253 aa11.72□□□□□ -0.53
CLK3-224ENST00000568605 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 SHISA8B8ZZ34 492 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 EIF1AYO14602 144 aaKnown RBP11.71□□□□□ -0.53
CLK3-224ENST00000568605 OIP5O43482 229 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 NPPAP01160 153 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 TMIGD3P0DMS9 266 aaPredicted RBP11.71□□□□□ -0.53
CLK3-224ENST00000568605 ARAFP10398 606 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 GPX2P18283 190 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 CEACAM8P31997 349 aaPredicted RBP11.71□□□□□ -0.53
CLK3-224ENST00000568605 LSP1P33241 339 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 OPRM1P35372 400 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 CYLC2Q14093 348 aaPredicted RBP11.71□□□□□ -0.53
CLK3-224ENST00000568605 MRPL2Q5T653 305 aaKnown RBP11.71□□□□□ -0.53
CLK3-224ENST00000568605 RNF220Q5VTB9 566 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 DLEU7Q6UYE1 221 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 CPLX4Q7Z7G2 160 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 ADGRE4PQ86SQ3 457 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 MSRB3Q8IXL7 192 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 TNIP2Q8NFZ5 429 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 OR52P1PQ8NH57 321 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 LILRB4Q8NHJ6 448 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 FBXO27Q8NI29 283 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 SLC25A43Q8WUT9 341 aaPredicted RBP11.71□□□□□ -0.53
CLK3-224ENST00000568605 KLHL15Q96M94 604 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 ANKRD27Q96NW4 1050 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 CGREF1Q99674 301 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 SH3GL1Q99961 368 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 PINK1Q9BXM7 581 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 FAM107BQ9H098 131 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 TMEM38AQ9H6F2 299 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 TMEM185BQ9H7F4 350 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 BCL2L10Q9HD36 194 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 TIGARQ9NQ88 270 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 SERINC1Q9NRX5 453 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 SLAMF8Q9P0V8 285 aa11.71□□□□□ -0.53
CLK3-224ENST00000568605 ZNF629Q9UEG4 869 aaPredicted RBP11.71□□□□□ -0.53
CLK3-224ENST00000568605 MCTS1Q9ULC4 181 aaKnown RBP11.71□□□□□ -0.53
CLK3-224ENST00000568605 ZNF443Q9Y2A4 671 aaPredicted RBP11.71□□□□□ -0.53
CLK3-224ENST00000568605 MRASO14807 208 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 DNAJA2O60884 412 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 IL18BPO95998 194 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 ETS2P15036 469 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 BMP5P22003 454 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 SLC6A2P23975 617 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 PSMA4P25789 261 aaKnown RBP11.7□□□□□ -0.54
CLK3-224ENST00000568605 SLC7A1P30825 629 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 HTR3AP46098 478 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 EIF1AXP47813 144 aaKnown RBP11.7□□□□□ -0.54
CLK3-224ENST00000568605 CLDN20P56880 219 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 GNGT1P63211 74 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 CDK6Q00534 326 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 SCARB2Q14108 478 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 RUNDC3AQ59EK9 446 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 SLC25A53Q5H9E4 307 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 RPS26P11Q5JNZ5 115 aaPredicted RBP11.7□□□□□ -0.54
CLK3-224ENST00000568605 REP15Q6BDI9 236 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 REEP3Q6NUK4 255 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 PPP4R4Q6NUP7 873 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 ZNF836Q6ZNA1 936 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 GRINAQ7Z429 371 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 HMGN2P46Q86SG4 172 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 GGNQ86UU5 652 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 RETREG3Q86VR2 466 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 SNX32Q86XE0 403 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 SLC30A8Q8IWU4 369 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 LILRA2Q8N149 483 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 C11orf65Q8NCR3 313 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 BHLHE22Q8NFJ8 381 aaPredicted RBP11.7□□□□□ -0.54
CLK3-224ENST00000568605 REXO5Q96IC2 774 aaKnown RBP11.7□□□□□ -0.54
CLK3-224ENST00000568605 ZNF607Q96SK3 696 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 SFXN3Q9BWM7 321 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 SPATA9Q9BWV2 254 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 PRRG4Q9BZD6 226 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms