RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TPT1P8Q9HAU6 139 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 SLC52A3Q9NQ40 469 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 STOML1Q9UBI4 398 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 LIPT1Q9Y234 373 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 ZNF175Q9Y473 711 aa13.5□□□□□ -0.25
VPS39-210ENST00000568357 HCFC1P51610 2035 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 ARHGAP21Q5T5U3 1957 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 TACC2O95359 2948 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 CLDN24A6NM45 220 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 TNFSF11O14788 317 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 EDF1O60869 148 aaKnown RBP13.49□□□□□ -0.25
VPS39-210ENST00000568357 CYP7B1O75881 506 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 ANP32DO95626 131 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 CHRM4P08173 479 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 UBTFL6P0CB48 400 aaPredicted RBP13.49□□□□□ -0.25
VPS39-210ENST00000568357 ADH6P28332 368 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 PGM1P36871 562 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 KIR2DL2P43627 348 aaPredicted RBP13.49□□□□□ -0.25
VPS39-210ENST00000568357 SLC6A8P48029 635 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 CCR4P51679 360 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 STX1BP61266 288 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 KCNJ10P78508 379 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 TXNL4AP83876 142 aaKnown RBP13.49□□□□□ -0.25
VPS39-210ENST00000568357 PLAURQ03405 335 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 QPRTQ15274 297 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 C6orf10Q5SRN2 563 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 LUZP2Q86TE4 346 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 TMCO5AQ8N6Q1 288 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 TOR1AIP2Q8NFQ8 470 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 PAIP1Q9H074 479 aaKnown RBP13.49□□□□□ -0.25
VPS39-210ENST00000568357 SLC38A1Q9H2H9 487 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 ACBD3Q9H3P7 528 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 MCCC2Q9HCC0 563 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 SLAMF8Q9P0V8 285 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 KCNN3Q9UGI6 736 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 PCDHB14Q9Y5E9 798 aa13.49□□□□□ -0.25
VPS39-210ENST00000568357 GPC6Q9Y625 555 aaPredicted RBP13.49□□□□□ -0.25
VPS39-210ENST00000568357 ETV2O00321 342 aaPredicted RBP13.48□□□□□ -0.25
VPS39-210ENST00000568357 CXCL13O43927 109 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 CRHP06850 196 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 NR2F1P10589 423 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 ETFAP13804 333 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 HOXB9P17482 250 aaPredicted RBP13.48□□□□□ -0.25
VPS39-210ENST00000568357 SFTPDP35247 375 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 KIR2DL3P43628 341 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 CBFBQ13951 182 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 SLC25A53Q5H9E4 307 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 OR2A2Q6IF42 318 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 VWA1Q6PCB0 445 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 LRRC74BQ6ZQY2 392 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 ESPNLQ6ZVH7 1005 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 BTLAQ7Z6A9 289 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 CNEP1R1Q8N9A8 125 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 FAM71CQ8NEG0 241 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 OR2V1Q8NHB1 315 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 OIT3Q8WWZ8 545 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 OSTF1Q92882 214 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 MRGPRX4Q96LA9 322 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 MTHFD2LQ9H903 347 aaPredicted RBP13.48□□□□□ -0.25
VPS39-210ENST00000568357 CRIM1Q9NZV1 1036 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 CCDC167Q9P0B6 97 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 FOXD3Q9UJU5 478 aaPredicted RBP13.48□□□□□ -0.25
VPS39-210ENST00000568357 DCTN4Q9UJW0 460 aa13.48□□□□□ -0.25
VPS39-210ENST00000568357 AGAP5A6NIR3 686 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 A8MXE2 369 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 NR5A2O00482 541 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 ADAM11O75078 769 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 TFPTP0C1Z6 253 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 CAPN3P20807 821 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 ME2P23368 584 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 ELK4P28324 431 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 CRATP43155 626 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 MAGEA8P43361 318 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 ANXA11P50995 505 aaKnown RBP13.47□□□□□ -0.25
VPS39-210ENST00000568357 CARD18P57730 90 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 SESN3P58005 492 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 EEF1A1P68104 462 aaKnown RBP13.47□□□□□ -0.25
VPS39-210ENST00000568357 HPCAP84074 193 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 MYBPHQ13203 477 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 GUSBP1Q15486 140 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 TMEM176BQ3YBM2 270 aaPredicted RBP13.47□□□□□ -0.25
VPS39-210ENST00000568357 AGKQ53H12 422 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 PAGE3Q5JUK9 113 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 EEF1A1P5Q5VTE0 462 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 HBMQ6B0K9 141 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 MSRB3Q8IXL7 192 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 ZZZ3Q8IYH5 903 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 ATP6V1C2Q8NEY4 427 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 SLC38A5Q8WUX1 472 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 CNOT9Q92600 299 aaKnown RBP13.47□□□□□ -0.25
VPS39-210ENST00000568357 SPDL1Q96EA4 605 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 LRRC46Q96FV0 321 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 KLHL15Q96M94 604 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 ZNF559Q9BR84 538 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 RBM24Q9BX46 236 aaKnown RBP13.47□□□□□ -0.25
VPS39-210ENST00000568357 PIGMQ9H3S5 423 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 NPHS2Q9NP85 383 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.47□□□□□ -0.25
VPS39-210ENST00000568357 SLC25A37Q9NYZ2 338 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 PACSIN3Q9UKS6 424 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms