RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SMU1Q2TAY7 513 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 PGS1Q32NB8 556 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 C6orf120Q7Z4R8 191 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 NUDCD3Q8IVD9 361 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 SLC43A2Q8N370 569 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 STEAP2Q8NFT2 490 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 RFWD2Q8NHY2 731 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 S100PBPQ96BU1 408 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 NMUR2Q9GZQ4 415 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 ASIC5Q9NY37 505 aa14.31□□□□□ -0.12
CLN3-229ENST00000567963 NOP53Q9NZM5 478 aaKnown RBP14.31□□□□□ -0.12
CLN3-229ENST00000567963 TRIM64A6NGJ6 449 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 TRIM64BA6NI03 449 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 ETV2O00321 342 aaPredicted RBP14.3□□□□□ -0.12
CLN3-229ENST00000567963 HS3ST1O14792 307 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 ITM2AO43736 263 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 UBL4AP11441 157 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 ENPP1P22413 925 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 SOAT1P35610 550 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 RAC3P60763 192 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 RPS26P62854 115 aaKnown RBP14.3□□□□□ -0.12
CLN3-229ENST00000567963 ZNF844Q08AG5 666 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 SELENBP1Q13228 472 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 CBFBQ13951 182 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 QPRTQ15274 297 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 GPR68Q15743 365 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 PDZK1Q5T2W1 519 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 SFRP5Q5T4F7 317 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 OR4F3Q6IEY1 312 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 CLECL1Q8IZS7 167 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 ZNF611Q8N823 705 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 TOR1AIP2Q8NFQ8 470 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 AENQ8WTP8 325 aaKnown RBP14.3□□□□□ -0.12
CLN3-229ENST00000567963 TMEM171Q8WVE6 324 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 ZIM3Q96PE6 472 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 SERHL2Q9H4I8 314 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 KCNE5Q9UJ90 142 aa14.3□□□□□ -0.12
CLN3-229ENST00000567963 IGHV3-15A0A0B4J1V0 119 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 SERINC4A6NH21 518 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 RNASET2O00584 256 aaKnown RBP14.29□□□□□ -0.12
CLN3-229ENST00000567963 SMAD7O15105 426 aaKnown RBP14.29□□□□□ -0.12
CLN3-229ENST00000567963 FCMRO60667 390 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 DNAJA2O60884 412 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 TMCC2O75069 709 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 STX11O75558 287 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 SLC7A1P30825 629 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 TSC22D1Q15714 1073 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 ZNF141Q15928 474 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 ARHGAP11BQ3KRB8 267 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 ALKBH2Q6NS38 261 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 EMBQ6PCB8 327 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 CLEC4FQ8N1N0 589 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 TMCO5AQ8N6Q1 288 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 TACO1Q9BSH4 297 aaKnown RBP14.29□□□□□ -0.12
CLN3-229ENST00000567963 THUMPD3Q9BV44 507 aaKnown RBP14.29□□□□□ -0.12
CLN3-229ENST00000567963 TMEM109Q9BVC6 243 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 LAT2Q9GZY6 243 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 CXorf56Q9H5V9 222 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 AKTIPQ9H8T0 292 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 BCO1Q9HAY6 547 aa14.29□□□□□ -0.12
CLN3-229ENST00000567963 ZNF701Q9NV72 531 aaPredicted RBP14.29□□□□□ -0.12
CLN3-229ENST00000567963 ING1Q9UK53 422 aaPredicted RBP14.29□□□□□ -0.12
CLN3-229ENST00000567963 ZANQ9Y493 2812 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 A0A1W2PNR3 127 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 ZNF814B7Z6K7 855 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 UGT2B17O75795 530 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 CNOT4O95628 575 aaKnown RBP14.28□□□□□ -0.12
CLN3-229ENST00000567963 AK1P00568 194 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 ADAP00813 363 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 CCR4P51679 360 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 SKP2Q13309 424 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 P2RY6Q15077 328 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 TIGD2Q4W5G0 525 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 ZNF781Q8N8C0 355 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 OR8J2Q8NGG1 315 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 LILRB1Q8NHL6 650 aaPredicted RBP14.28□□□□□ -0.12
CLN3-229ENST00000567963 RAB3IL1Q8TBN0 382 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 HSD17B8Q92506 261 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 AKAP1Q92667 903 aaKnown RBP eCLIP14.28□□□□□ -0.12
CLN3-229ENST00000567963 PKNOX2Q96KN3 472 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 PPP1R36Q96LQ0 422 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 PSD2Q9BQI7 771 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 KLHL9Q9P2J3 617 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 MKLN1Q9UL63 735 aa14.28□□□□□ -0.12
CLN3-229ENST00000567963 CENPVL1A0A0U1RR11 272 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 RNF103-CHMP3A0A140T963 221 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 WDR91A4D1P6 747 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 SCN2BO60939 215 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 IL32P24001 234 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 ITGADQ13349 1161 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 TAB1Q15750 504 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 PDCD2Q16342 344 aaPredicted RBP14.27□□□□□ -0.12
CLN3-229ENST00000567963 NCMAPQ5T1S8 102 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 ADAM5Q6NVV9 412 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 C3orf33Q6P1S2 294 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 MIPOL1Q8TD10 442 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 KISS1RQ969F8 398 aaPredicted RBP14.27□□□□□ -0.12
CLN3-229ENST00000567963 ARL8AQ96BM9 186 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 SLC35G5Q96KT7 338 aa14.27□□□□□ -0.12
CLN3-229ENST00000567963 C20orf27Q9GZN8 174 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms