RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NCCRP1Q6ZVX7 275 aaPredicted RBP15.61■□□□□ 0.09
CLN3-217ENST00000565354 KRT73Q86Y46 540 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 CHERPQ8IWX8 916 aaKnown RBP15.61■□□□□ 0.09
CLN3-217ENST00000565354 PM20D2Q8IYS1 436 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 C11orf65Q8NCR3 313 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 OR8J3Q8NGG0 315 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 OR10A6Q8NH74 314 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 ZG16BQ96DA0 208 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 SPATA5L1Q9BVQ7 753 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 UGT2B28Q9BY64 529 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 LAT2Q9GZY6 243 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 TP63Q9H3D4 680 aaPredicted RBP15.61■□□□□ 0.09
CLN3-217ENST00000565354 TMEM38AQ9H6F2 299 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 ARMC7Q9H6L4 198 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 HCFC1P51610 2035 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 B4DXG7 233 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 OIP5O43482 229 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 ZIC3O60481 467 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 PGM3O95394 542 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 BMP7P18075 431 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 ADH7P40394 386 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 RBBP4Q09028 425 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 MAPK11Q15759 364 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 GLYR1Q49A26 553 aaPredicted RBP15.6■□□□□ 0.09
CLN3-217ENST00000565354 ARPINQ7Z6K5 226 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 DOLPP1Q86YN1 238 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 CMIPQ8IY22 773 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 C10orf111Q8N326 155 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 HIPK4Q8NE63 616 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 OR5M1Q8NGP8 315 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 OR5W2Q8NH69 310 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 BCAS4Q8TDM0 211 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 PHF10Q8WUB8 498 aaKnown RBP15.6■□□□□ 0.09
CLN3-217ENST00000565354 ZBTB8AQ96BR9 441 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 ZNF607Q96SK3 696 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 PIF1Q9H611 641 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 BCL2L10Q9HD36 194 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 PNPLA3Q9NST1 481 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 MED17Q9NVC6 651 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 STOML1Q9UBI4 398 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 IFT52Q9Y366 437 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 ABCA4P78363 2273 aa15.6■□□□□ 0.09
CLN3-217ENST00000565354 AKAP6Q13023 2319 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 H3BML4 177 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 LINC01387J3KSC0 135 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 FXYD1O00168 92 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 NID1P14543 1247 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 PGCP20142 388 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 CHMP24386 653 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 PGM1P36871 562 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 ART1P52961 327 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 CRYZQ08257 329 aaKnown RBP15.59■□□□□ 0.09
CLN3-217ENST00000565354 SF3B4Q15427 424 aaKnown RBP eCLIP15.59■□□□□ 0.092e-7■■■■□ 24.8
CLN3-217ENST00000565354 RABL3Q5HYI8 236 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 NHSL2Q5HYW2 709 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 ZNF311Q5JNZ3 666 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 AP1ARQ63HQ0 302 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 VASNQ6EMK4 673 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 C3P1Q6ZMU1 363 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 SERPINA11Q86U17 422 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 VRK2Q86Y07 508 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 SLC30A8Q8IWU4 369 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 ZNF563Q8TA94 476 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 SMPDL3BQ92485 455 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 TIMP4Q99727 224 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 SPATA9Q9BWV2 254 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 KAT8Q9H7Z6 458 aaKnown RBP15.59■□□□□ 0.09
CLN3-217ENST00000565354 ICAM5Q9UMF0 924 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 ZNF443Q9Y2A4 671 aaPredicted RBP15.59■□□□□ 0.09
CLN3-217ENST00000565354 AP3M1Q9Y2T2 418 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 DSPPQ9NZW4 1301 aa15.59■□□□□ 0.09
CLN3-217ENST00000565354 PRRC2AP48634 2157 aaKnown RBP15.59■□□□□ 0.09
CLN3-217ENST00000565354 OR2M5A3KFT3 312 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 CLDN24A6NM45 220 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 H0Y3Z8 333 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 WDR1O75083 606 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 THBS1P07996 1170 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 PABPC4LP0CB38 370 aaKnown RBP15.58■□□□□ 0.08
CLN3-217ENST00000565354 PEPDP12955 493 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 GABRA1P14867 456 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 UQCRBP14927 111 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 ETS2P15036 469 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 ZNF17P17021 662 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 HOXB4P17483 251 aaPredicted RBP15.58■□□□□ 0.08
CLN3-217ENST00000565354 RPS4Y1P22090 263 aaKnown RBP15.58■□□□□ 0.08
CLN3-217ENST00000565354 AQP1P29972 269 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 RYKP34925 604 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 SLC6A8P48029 635 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 CPA2P48052 419 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 GFRA1P56159 465 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 SRYQ05066 204 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 SKP2Q13309 424 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 ZSWIM7Q19AV6 140 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 PLPPR5Q32ZL2 321 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 MRPL2Q5T653 305 aaKnown RBP15.58■□□□□ 0.08
CLN3-217ENST00000565354 INTS11Q5TA45 600 aaKnown RBP15.58■□□□□ 0.08
CLN3-217ENST00000565354 ZNF836Q6ZNA1 936 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 CHMP1BQ7LBR1 199 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 GPR119Q8TDV5 335 aa15.58■□□□□ 0.08
CLN3-217ENST00000565354 CA5BP1Q8WTZ4 195 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms