RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 N4BP2L1Q5TBK1 243 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 LIPMQ5VYY2 423 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 MED27Q6P2C8 311 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TMEM220Q6QAJ8 160 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TFAP2EQ6VUC0 442 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 RBM44Q6ZP01 1051 aaKnown RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 TMPRSS11FQ6ZWK6 438 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SLC46A3Q7Z3Q1 461 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TMED4Q7Z7H5 227 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ISCA2Q86U28 154 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 PIM3Q86V86 326 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 FUNDC1Q8IVP5 155 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 NAXDQ8IW45 347 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 MMP21Q8N119 569 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 LRRC75A-AS1Q8N1F1 130 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 MARVELD2Q8N4S9 558 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CLEC1AQ8NC01 280 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 OR51D1Q8NGF3 324 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 OR11L1Q8NGX0 322 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 OR4K15Q8NH41 348 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SPATA22Q8NHS9 363 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SPPL2AQ8TCT8 520 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SORCS1Q8WY21 1168 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 FCGR1BQ92637 280 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CDS1Q92903 461 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ARRDC3Q96B67 414 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 C16orf58Q96GQ5 468 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SH3YL1Q96HL8 342 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 SLC45A3Q96JT2 553 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ZNF583Q96ND8 569 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 STACQ99469 402 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 RBBP8Q99708 897 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CMKLR1Q99788 373 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 HOPXQ9BPY8 73 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 WDR77Q9BQA1 342 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 NUDT22Q9BRQ3 303 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 NICN1Q9BSH3 213 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TMEM43Q9BTV4 400 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 MSTO1Q9BUK6 570 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 GGACTQ9BVM4 153 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TRMT61BQ9BVS5 477 aaKnown RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 PHF7Q9BWX1 381 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 MRPS26Q9BYN8 205 aaKnown RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 EGLN1Q9GZT9 426 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 PCDHAC1Q9H158 963 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ING2Q9H160 280 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 NEUROG2Q9H2A3 272 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ARMC7Q9H6L4 198 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ANKRA2Q9H9E1 313 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SGK2Q9HBY8 427 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 HRASLSQ9HDD0 168 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SIRT7Q9NRC8 400 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ACSS1Q9NUB1 689 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 TMEM161AQ9NX61 479 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SPHK1Q9NYA1 384 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 OR6C3Q9NZP0 311 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TMEM9Q9P0T7 183 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 FBXL3Q9UKT7 428 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 PADI3Q9ULW8 664 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 NENFQ9UMX5 172 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ICKQ9UPZ9 632 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 MRPS18CQ9Y3D5 142 aaKnown RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 HEMK1Q9Y5R4 338 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 ALG6Q9Y672 507 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CLIC4Q9Y696 253 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SIRT4Q9Y6E7 314 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 RTEL1-TNFRSF6BF6WH68 1400 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ZNF609O15014 1411 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 UHRF1BP1Q6BDS2 1440 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SPATA31E1Q6ZUB1 1445 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CEP170Q5SW79 1584 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TTC37Q6PGP7 1564 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CEP152O94986 1710 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CCDC141Q6ZP82 1450 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 MYH7P12883 1935 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SPATA31D1Q6ZQQ2 1576 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 DIP2BQ9P265 1576 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 LY6G6EA0A0G2JKS1 128 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 A0A1B0GVM2 712 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 SMCO3A2RU48 225 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 MBLAC1A4D2B0 266 aaPredicted RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 SAC3D1A6NKF1 404 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 EIF4E1BA6NMX2 242 aaKnown RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 TEX46H3BTG2 121 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 M0R036 132 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 SULT1C2O00338 296 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 RRHO14718 337 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 MSI1O43347 362 aaKnown RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 LCMT2O60294 686 aaKnown RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 SLC22A5O76082 557 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 VAPBO95292 243 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 AP2A1O95782 977 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 PLAUP00749 431 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 VIPP01282 170 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 IFNA5P01569 189 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 FTH1P02794 183 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 APRTP07741 180 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 GTF2F2P13984 249 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 HOXB6P17509 224 aaKnown RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 CTPS1P17812 591 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms