RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 POMZP3Q6PJE2 187 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 GTF2IRD2Q86UP8 949 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 GGNQ86UU5 652 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 PEX5LQ8IYB4 626 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 LILRA2Q8N149 483 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 FBXO27Q8NI29 283 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 POC1BQ8TC44 478 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 ST8SIA1Q92185 356 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 KLHL15Q96M94 604 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 THUMPD3Q9BV44 507 aaKnown RBP12.05□□□□□ -0.48
CLK3-213ENST00000563842 TRIM8Q9BZR9 551 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 SLC38A1Q9H2H9 487 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 NPHS2Q9NP85 383 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 SERINC1Q9NRX5 453 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 KCNN3Q9UGI6 736 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 KCNE5Q9UJ90 142 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 DCTN4Q9UJW0 460 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 PRDM4Q9UKN5 801 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 PCDHB14Q9Y5E9 798 aa12.05□□□□□ -0.48
CLK3-213ENST00000563842 UQCRHLA0A096LP55 91 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 A0A0G2JND7 137 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 H0YC42 278 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 CLIC1O00299 241 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 NR5A2O00482 541 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 ADAMDEC1O15204 470 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 OIP5O43482 229 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 DNAJA2O60884 412 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 DBIP07108 87 aaKnown RBP12.04□□□□□ -0.48
CLK3-213ENST00000563842 PABPC4LP0CB38 370 aaKnown RBP12.04□□□□□ -0.48
CLK3-213ENST00000563842 IL7RP16871 459 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 FKBP2P26885 142 aaKnown RBP12.04□□□□□ -0.48
CLK3-213ENST00000563842 UQCRC1P31930 480 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 PGM1P36871 562 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 RNF144AP50876 292 aaPredicted RBP12.04□□□□□ -0.48
CLK3-213ENST00000563842 TPD52P55327 224 aaPredicted RBP12.04□□□□□ -0.48
CLK3-213ENST00000563842 SELENBP1Q13228 472 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 SKP2Q13309 424 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 QPRTQ15274 297 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 MAPK14Q16539 360 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 ZSWIM7Q19AV6 140 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 NDUFAF6Q330K2 333 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 LRIF1Q5T3J3 769 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 HBMQ6B0K9 141 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 SLC2A7Q6PXP3 512 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 OLIG3Q7RTU3 272 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 FUNDC1Q8IVP5 155 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 GCNT2Q8N0V5 402 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 ANKFN1Q8N957 763 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 OR10D3Q8NH80 312 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 OR2V1Q8NHB1 315 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 ZNF563Q8TA94 476 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 TSPEARQ8WU66 669 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 WDR60Q8WVS4 1066 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 THOC1Q96FV9 657 aaKnown RBP12.04□□□□□ -0.48
CLK3-213ENST00000563842 REXO5Q96IC2 774 aaKnown RBP12.04□□□□□ -0.48
CLK3-213ENST00000563842 PAIP1Q9H074 479 aaKnown RBP12.04□□□□□ -0.48
CLK3-213ENST00000563842 ARMC7Q9H6L4 198 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 RNF122Q9H9V4 155 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 EXOSC3Q9NQT5 275 aaKnown RBP12.04□□□□□ -0.48
CLK3-213ENST00000563842 GLRX2Q9NS18 164 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 SLC6A13Q9NSD5 602 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 JKAMPQ9P055 326 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 PACSIN3Q9UKS6 424 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 CORO2BQ9UQ03 480 aa12.04□□□□□ -0.48
CLK3-213ENST00000563842 A0A1W2PNV4 684 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 A0A1W2PP18 115 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 PRAMEF27A3QJZ7 478 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 AGAP5A6NIR3 686 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 ETV2O00321 342 aaPredicted RBP12.03□□□□□ -0.48
CLK3-213ENST00000563842 TNFSF11O14788 317 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 MSTNO14793 375 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 CHRM4P08173 479 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 ETFAP13804 333 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 UQCRBP14927 111 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 CPA2P48052 419 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 AGFG1P52594 562 aaKnown RBP12.03□□□□□ -0.48
CLK3-213ENST00000563842 MVDP53602 400 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 CARD18P57730 90 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 SORDQ00796 357 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 FOXF2Q12947 444 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 MYBPHQ13203 477 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 PPP4R4Q6NUP7 873 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 C3orf33Q6P1S2 294 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 ZNF440Q8IYI8 595 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 ZNF295-AS1Q8N0V1 137 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 CNEP1R1Q8N9A8 125 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 FAM71CQ8NEG0 241 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 FNDC9Q8TBE3 224 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 FIG4Q92562 907 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 OSTF1Q92882 214 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 CPNE4Q96A23 557 aaPredicted RBP12.03□□□□□ -0.48
CLK3-213ENST00000563842 ZG16BQ96DA0 208 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 ZNF845Q96IR2 970 aaPredicted RBP12.03□□□□□ -0.48
CLK3-213ENST00000563842 ADGRG7Q96K78 797 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 NPAS1Q99742 590 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 ZNF559Q9BR84 538 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 ACER3Q9NUN7 267 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 LEF1Q9UJU2 399 aaPredicted RBP12.03□□□□□ -0.48
CLK3-213ENST00000563842 ZNF232Q9UNY5 417 aa12.03□□□□□ -0.48
CLK3-213ENST00000563842 SPIN1Q9Y657 262 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms