RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 UBL4AP11441 157 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 MATN1P21941 496 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 RAC3P60763 192 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 ABCE1P61221 599 aaKnown RBP15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 SELENBP1Q13228 472 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 SKP2Q13309 424 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 ARHGAP11BQ3KRB8 267 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 TMEM176BQ3YBM2 270 aaPredicted RBP15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 TNFAIP8L3Q5GJ75 292 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 TMEM201Q5SNT2 666 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 OR4F3Q6IEY1 312 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 TFAP2EQ6VUC0 442 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 FCRLAQ7L513 359 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 CLECL1Q8IZS7 167 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 KIRREL3Q8IZU9 778 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 ZNF781Q8N8C0 355 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 STEAP2Q8NFT2 490 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 COX4I2Q96KJ9 171 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 USB1Q9BQ65 265 aaKnown RBP15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 ZNF350Q9GZX5 532 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 LAT2Q9GZY6 243 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 AKTIPQ9H8T0 292 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 BCO1Q9HAY6 547 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 RAP2CQ9Y3L5 183 aa15.33■□□□□ 0.04
VPS9D1-203ENST00000563798 ANKRD28O15084 1053 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 TM9SF1O15321 606 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 FCMRO60667 390 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 STX11O75558 287 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 AGR2O95994 175 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 YES1P07947 543 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 RPS26P62854 115 aaKnown RBP15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 ZNF844Q08AG5 666 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 CBFBQ13951 182 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 QPRTQ15274 297 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 PGS1Q32NB8 556 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 NDUFAF6Q330K2 333 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 PDZK1Q5T2W1 519 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 ADAM5Q6NVV9 412 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 ZNF704Q6ZNC4 412 aaPredicted RBP15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 PLEKHM3Q6ZWE6 761 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 NUFIP2Q7Z417 695 aaKnown RBP15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 TUSC5Q8IXB3 177 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 ST8SIA1Q92185 356 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 TESCQ96BS2 214 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 PKNOX2Q96KN3 472 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 SMR3AQ99954 134 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 C20orf27Q9GZN8 174 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 SAP130Q9H0E3 1048 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 C12orf49Q9H741 205 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 POLE3Q9NRF9 147 aa15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 ING1Q9UK53 422 aaPredicted RBP15.32■□□□□ 0.04
VPS9D1-203ENST00000563798 ARID1AO14497 2285 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 NAV3Q8IVL0 2385 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 RNF103-CHMP3A0A140T963 221 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 PRSS51A0A1B0GVH4 220 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 UGT2B17O75795 530 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 ADSLP30566 484 aaPredicted RBP15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 SOAT1P35610 550 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 RNF144AP50876 292 aaPredicted RBP15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 RPL14P50914 215 aaKnown RBP15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 PHC1P78364 1004 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 LTBQ06643 244 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 P2RY6Q15077 328 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 CHI3L2Q15782 390 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 KRT71Q3SY84 523 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 SFRP5Q5T4F7 317 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 ANXA8L1Q5VT79 327 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 ZNF611Q8N823 705 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 FAM71CQ8NEG0 241 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 ARL8AQ96BM9 186 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 PLPPR2Q96GM1 343 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 SLC35G5Q96KT7 338 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 SORT1Q99523 831 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 ZNF701Q9NV72 531 aaPredicted RBP15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 EXD2Q9NVH0 621 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 PCDHGB4Q9UN71 923 aa15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 NSD1Q96L73 2696 aaPredicted RBP15.31■□□□□ 0.04
VPS9D1-203ENST00000563798 HS3ST1O14792 307 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 RGS16O15492 202 aaPredicted RBP15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 HEXAP06865 529 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 ENPP1P22413 925 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 UQCRC2P22695 453 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 CASP8Q14790 479 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 GPR68Q15743 365 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 PDCD2Q16342 344 aaPredicted RBP15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 DPY19L1Q2PZI1 675 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 C3orf33Q6P1S2 294 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 YTHDF3Q7Z739 585 aaKnown RBP15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 ZNF614Q8N883 585 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 S100PBPQ96BU1 408 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 PSD2Q9BQI7 771 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 BDH2Q9BUT1 245 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 THUMPD3Q9BV44 507 aaKnown RBP15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 DPY30Q9C005 99 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 OR51I1Q9H343 314 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 KLHL9Q9P2J3 617 aa15.3■□□□□ 0.04
VPS9D1-203ENST00000563798 DSCAMO60469 2012 aa15.29■□□□□ 0.04
VPS9D1-203ENST00000563798 CENPVL1A0A0U1RR11 272 aa15.29■□□□□ 0.04
VPS9D1-203ENST00000563798 WDR91A4D1P6 747 aa15.29■□□□□ 0.04
VPS9D1-203ENST00000563798 ZNF814B7Z6K7 855 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms