RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 HPCAP84074 193 aa15.08■□□□□ 0
CLK3-210ENST00000563112 KEAP1Q14145 624 aa15.08■□□□□ 0
CLK3-210ENST00000563112 TOMM34Q15785 309 aaPredicted RBP15.08■□□□□ 0
CLK3-210ENST00000563112 EXOC3L2Q2M3D2 409 aa15.08■□□□□ 0
CLK3-210ENST00000563112 TMEM176BQ3YBM2 270 aaPredicted RBP15.08■□□□□ 0
CLK3-210ENST00000563112 SAXO2Q658L1 398 aa15.08■□□□□ 0
CLK3-210ENST00000563112 NXNQ6DKJ4 435 aa15.08■□□□□ 0
CLK3-210ENST00000563112 HEPHL1Q6MZM0 1159 aa15.08■□□□□ 0
CLK3-210ENST00000563112 TNFAIP8L2Q6P589 184 aaPredicted RBP15.08■□□□□ 0
CLK3-210ENST00000563112 PAMR1Q6UXH9 720 aa15.08■□□□□ 0
CLK3-210ENST00000563112 EIF3MQ7L2H7 374 aaKnown RBP15.08■□□□□ 0
CLK3-210ENST00000563112 STK32CQ86UX6 486 aa15.08■□□□□ 0
CLK3-210ENST00000563112 ATP6V1C2Q8NEY4 427 aa15.08■□□□□ 0
CLK3-210ENST00000563112 RAB8BQ92930 207 aa15.08■□□□□ 0
CLK3-210ENST00000563112 CPNE4Q96A23 557 aaPredicted RBP15.08■□□□□ 0
CLK3-210ENST00000563112 NEURL3Q96EH8 262 aa15.08■□□□□ 0
CLK3-210ENST00000563112 CCDC115Q96NT0 180 aa15.08■□□□□ 0
CLK3-210ENST00000563112 KLHL4Q9C0H6 718 aa15.08■□□□□ 0
CLK3-210ENST00000563112 ZNF350Q9GZX5 532 aa15.08■□□□□ 0
CLK3-210ENST00000563112 LAT2Q9GZY6 243 aa15.08■□□□□ 0
CLK3-210ENST00000563112 WDR55Q9H6Y2 383 aaPredicted RBP15.08■□□□□ 0
CLK3-210ENST00000563112 MANSC1Q9H8J5 431 aa15.08■□□□□ 0
CLK3-210ENST00000563112 TMBIM4Q9HC24 238 aa15.08■□□□□ 0
CLK3-210ENST00000563112 KLHL28Q9NXS3 571 aa15.08■□□□□ 0
CLK3-210ENST00000563112 WDR45Q9Y484 360 aa15.08■□□□□ 0
CLK3-210ENST00000563112 MTORP42345 2549 aa15.08■□□□□ 0
CLK3-210ENST00000563112 GOLGA8QA0A0J9YX86 632 aa15.07■□□□□ 0
CLK3-210ENST00000563112 GOLGA8OA6NCC3 632 aa15.07■□□□□ 0
CLK3-210ENST00000563112 GOLGA8NF8WBI6 632 aa15.07■□□□□ 0
CLK3-210ENST00000563112 EFNA2O43921 213 aa15.07■□□□□ 0
CLK3-210ENST00000563112 UGT2B17O75795 530 aa15.07■□□□□ 0
CLK3-210ENST00000563112 ALDOCP09972 364 aaKnown RBP15.07■□□□□ 0
CLK3-210ENST00000563112 PGCP20142 388 aa15.07■□□□□ 0
CLK3-210ENST00000563112 SLC7A1P30825 629 aa15.07■□□□□ 0
CLK3-210ENST00000563112 TXNL4AP83876 142 aaKnown RBP15.07■□□□□ 0
CLK3-210ENST00000563112 SELENBP1Q13228 472 aa15.07■□□□□ 0
CLK3-210ENST00000563112 QPRTQ15274 297 aa15.07■□□□□ 0
CLK3-210ENST00000563112 RNPS1Q15287 305 aaKnown RBP15.07■□□□□ 0
CLK3-210ENST00000563112 SLC25A53Q5H9E4 307 aa15.07■□□□□ 0
CLK3-210ENST00000563112 BEND6Q5SZJ8 279 aaPredicted RBP15.07■□□□□ 0
CLK3-210ENST00000563112 GLB1L3Q8NCI6 653 aaPredicted RBP15.07■□□□□ 0
CLK3-210ENST00000563112 TMEM234Q8WY98 164 aa15.07■□□□□ 0
CLK3-210ENST00000563112 ROPN1LQ96C74 230 aa15.07■□□□□ 0
CLK3-210ENST00000563112 TLCD1Q96CP7 247 aa15.07■□□□□ 0
CLK3-210ENST00000563112 OR52E6Q96RD3 313 aa15.07■□□□□ 0
CLK3-210ENST00000563112 PANX1Q96RD7 426 aa15.07■□□□□ 0
CLK3-210ENST00000563112 THUMPD3Q9BV44 507 aaKnown RBP15.07■□□□□ 0
CLK3-210ENST00000563112 CXXC4Q9H2H0 198 aa15.07■□□□□ 0
CLK3-210ENST00000563112 PLEKHF2Q9H8W4 249 aa15.07■□□□□ 0
CLK3-210ENST00000563112 SERINC1Q9NRX5 453 aa15.07■□□□□ 0
CLK3-210ENST00000563112 PRRC2AP48634 2157 aaKnown RBP15.07■□□□□ 0
CLK3-210ENST00000563112 SETD2Q9BYW2 2564 aaPredicted RBP15.06■□□□□ 0
CLK3-210ENST00000563112 CCDC154A6NI56 674 aa15.06■□□□□ 0
CLK3-210ENST00000563112 PGRP06401 933 aa15.06■□□□□ 0
CLK3-210ENST00000563112 IDO1P14902 403 aa15.06■□□□□ 0
CLK3-210ENST00000563112 SKP2Q13309 424 aa15.06■□□□□ 0
CLK3-210ENST00000563112 ZNF239Q16600 458 aaKnown RBP15.06■□□□□ 0
CLK3-210ENST00000563112 GPAT3Q53EU6 434 aa15.06■□□□□ 0
CLK3-210ENST00000563112 TMEM201Q5SNT2 666 aa15.06■□□□□ 0
CLK3-210ENST00000563112 ZNF621Q6ZSS3 439 aa15.06■□□□□ 0
CLK3-210ENST00000563112 BEND4Q6ZU67 534 aa15.06■□□□□ 0
CLK3-210ENST00000563112 ZFP90Q8TF47 636 aa15.06■□□□□ 0
CLK3-210ENST00000563112 ROBO4Q8WZ75 1007 aa15.06■□□□□ 0
CLK3-210ENST00000563112 ST8SIA1Q92185 356 aa15.06■□□□□ 0
CLK3-210ENST00000563112 MBD6Q96DN6 1003 aa15.06■□□□□ 0
CLK3-210ENST00000563112 TEX37Q96LM6 180 aa15.06■□□□□ 0
CLK3-210ENST00000563112 ALPK1Q96QP1 1244 aa15.06■□□□□ 0
CLK3-210ENST00000563112 KCNE5Q9UJ90 142 aa15.06■□□□□ 0
CLK3-210ENST00000563112 SLC35A3Q9Y2D2 325 aa15.06■□□□□ 0
CLK3-210ENST00000563112 GPR45Q9Y5Y3 372 aa15.06■□□□□ 0
CLK3-210ENST00000563112 HEATR5AQ86XA9 2040 aa15.05■□□□□ 0
CLK3-210ENST00000563112 KIAA0513O60268 411 aa15.05■□□□□ -0
CLK3-210ENST00000563112 PRKD3O94806 890 aa15.05■□□□□ -0
CLK3-210ENST00000563112 ATE1O95260 518 aa15.05■□□□□ -0
CLK3-210ENST00000563112 NTN1O95631 604 aa15.05■□□□□ -0
CLK3-210ENST00000563112 UBTFL6P0CB48 400 aaPredicted RBP15.05■□□□□ -0
CLK3-210ENST00000563112 PPP3CBP16298 524 aa15.05■□□□□ -0
CLK3-210ENST00000563112 CRYGSP22914 178 aa15.05■□□□□ -0
CLK3-210ENST00000563112 SHC1P29353 583 aa15.05■□□□□ -0
CLK3-210ENST00000563112 PPP2R2AP63151 447 aa15.05■□□□□ -0
CLK3-210ENST00000563112 TIGD2Q4W5G0 525 aa15.05■□□□□ -0
CLK3-210ENST00000563112 TYW3Q6IPR3 259 aaKnown RBP15.05■□□□□ -0
CLK3-210ENST00000563112 FCRLAQ7L513 359 aa15.05■□□□□ -0
CLK3-210ENST00000563112 OLIG3Q7RTU3 272 aa15.05■□□□□ -0
CLK3-210ENST00000563112 ZNF550Q7Z398 422 aa15.05■□□□□ -0
CLK3-210ENST00000563112 RNF130Q86XS8 419 aa15.05■□□□□ -0
CLK3-210ENST00000563112 ZNF619Q8N2I2 560 aa15.05■□□□□ -0
CLK3-210ENST00000563112 SLC43A2Q8N370 569 aa15.05■□□□□ -0
CLK3-210ENST00000563112 RNF128Q8TEB7 428 aa15.05■□□□□ -0
CLK3-210ENST00000563112 PIK3IP1Q96FE7 263 aa15.05■□□□□ -0
CLK3-210ENST00000563112 ZC3HAV1LQ96H79 300 aaKnown RBP15.05■□□□□ -0
CLK3-210ENST00000563112 SAP130Q9H0E3 1048 aa15.05■□□□□ -0
CLK3-210ENST00000563112 GP6Q9HCN6 339 aa15.05■□□□□ -0
CLK3-210ENST00000563112 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.05■□□□□ -0
CLK3-210ENST00000563112 C6orf203Q9P0P8 240 aaPredicted RBP15.05■□□□□ -0
CLK3-210ENST00000563112 LIPT1Q9Y234 373 aa15.05■□□□□ -0
CLK3-210ENST00000563112 C9JVG2 144 aa15.04■□□□□ -0
CLK3-210ENST00000563112 ETV2O00321 342 aaPredicted RBP15.04■□□□□ -0
CLK3-210ENST00000563112 KLF11O14901 512 aa15.04■□□□□ -0
CLK3-210ENST00000563112 SLC22A3O75751 556 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms