RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 IGSF21Q96ID5 467 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PRRC1Q96M27 445 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 HS6ST2Q96MM7 605 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 NEDD4LQ96PU5 975 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLC22A12Q96S37 553 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 MTERF1Q99551 399 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 COQ7Q99807 217 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SOSTQ9BQB4 213 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 H2AFJQ9BTM1 129 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ZSCAN5AQ9BUG6 496 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 WRAP53Q9BUR4 548 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 MND1Q9BWT6 205 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TSSK6Q9BXA6 273 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 RSPO3Q9BXY4 272 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 ZNF717Q9BY31 904 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 POLDIP3Q9BY77 421 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 UCK2Q9BZX2 261 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ROGDIQ9GZN7 287 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLC22A4Q9H015 551 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ATG10Q9H0Y0 220 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ABCG8Q9H221 673 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TP63Q9H3D4 680 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 EPHX3Q9H6B9 360 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLA2Q9H6Q3 261 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ZDHHC6Q9H6R6 413 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 NIPAL2Q9H841 368 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ZNF556Q9HAH1 456 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SGK2Q9HBY8 427 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 FGF20Q9NP95 211 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 NMRK2Q9NPI5 230 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 WASH6PQ9NQA3 447 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PRDM8Q9NQV8 689 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ITM2CQ9NQX7 267 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PLSCR4Q9NRQ2 329 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SIRT3Q9NTG7 399 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 MAN2C1Q9NTJ4 1040 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CLN6Q9NWW5 311 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TXNL4BQ9NX01 149 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 ZSCAN32Q9NX65 697 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 MS4A12Q9NXJ0 267 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TAS2R9Q9NYW1 312 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TAAR2Q9P1P5 351 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 WNT16Q9UBV4 365 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PLEKHB1Q9UF11 243 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLC25A13Q9UJS0 675 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 LSM7Q9UK45 103 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 RAB23Q9ULC3 237 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CLEC4EQ9ULY5 219 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 DIMT1Q9UNQ2 313 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 MGAT4BQ9UQ53 548 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 POLHQ9Y253 713 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 WBP11Q9Y2W2 641 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 RBMX2Q9Y388 322 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 CMAHPQ9Y471 501 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ASB4Q9Y574 426 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PCDHB7Q9Y5E2 793 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 N6AMT1Q9Y5N5 214 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 KCNE2Q9Y6J6 123 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SCN2AQ99250 2005 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TRAV19A0A0A6YYK7 116 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 GNG14A0A1W2PPG7 69 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 A0A1W2PRB8 838 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 A0A1W2PRQ8 180 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 IRGMA1A4Y4 181 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MEIOCA2RUB1 952 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 HEPACAM2A8MVW5 462 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 KDM4EB2RXH2 506 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 FAM25AB3EWG3 89 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 FAM25CB3EWG5 89 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 FAM25GB3EWG6 89 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 ANHXE9PGG2 379 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 SGK494L7N484 410 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 SYT5O00445 386 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 PLPP1O14494 284 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 AP3D1O14617 1153 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MYL12BO14950 172 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 POLR1CO15160 346 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 CASC3O15234 703 aaKnown RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 PLA2G10O15496 165 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 B4GALT2O60909 372 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 LDB3O75112 727 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 GUCY1B2O75343 617 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 ENTPD6O75354 484 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MTX2O75431 263 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 UBXN7O94888 489 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 MFN2O95140 757 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 SOX14O95416 240 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 POP4O95707 220 aaKnown RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 RAB36O95755 333 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 TBX6O95947 436 aaPredicted RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 SOD1P00441 154 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 C1QBP02746 253 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 DNTTP04053 509 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 KRT8P05787 483 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 URODP06132 367 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 BCHEP06276 602 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 H1F0P07305 194 aaKnown RBP2.28□□□□□ -2.04
SPG11-223ENST00000560858 IL3P08700 152 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 FGF2P09038 288 aa2.28□□□□□ -2.04
SPG11-223ENST00000560858 CSF3P09919 207 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms