RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ADAM11O75078 769 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 SYNGR4O95473 234 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 PLGP00747 810 aaPredicted RBP15.81■□□□□ 0.12
HDDC3-205ENST00000559898 TUBBP07437 444 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 UBL4AP11441 157 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 FCGR2AP12318 317 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 DDX5P17844 614 aaKnown RBP15.81■□□□□ 0.12
HDDC3-205ENST00000559898 LBPP18428 481 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 CCR4P51679 360 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 CTBP2P56545 445 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 RIPPLY3P57055 190 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 ZNF141Q15928 474 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 ARHGAP11BQ3KRB8 267 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 FAM174BQ3ZCQ3 159 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 SAXO2Q658L1 398 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 TYW3Q6IPR3 259 aaKnown RBP15.81■□□□□ 0.12
HDDC3-205ENST00000559898 HEPHL1Q6MZM0 1159 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.81■□□□□ 0.12
HDDC3-205ENST00000559898 NATD1Q8N6N6 113 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 RNF128Q8TEB7 428 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 XAGE5Q8WWM1 108 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 ZNF775Q96BV0 537 aaPredicted RBP15.81■□□□□ 0.12
HDDC3-205ENST00000559898 MOAP1Q96BY2 351 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 SLC39A3Q9BRY0 314 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 ZNF350Q9GZX5 532 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 HOXD1Q9GZZ0 328 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 EMC9Q9Y3B6 208 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 ACTL7BQ9Y614 415 aa15.81■□□□□ 0.12
HDDC3-205ENST00000559898 FLNAP21333 2647 aaKnown RBP15.8■□□□□ 0.12
HDDC3-205ENST00000559898 TMEM120BA0PK00 339 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 ZNF264O43296 627 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 KLF4O43474 513 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 KRT16P08779 473 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 UBTFL6P0CB48 400 aaPredicted RBP15.8■□□□□ 0.12
HDDC3-205ENST00000559898 KITP10721 976 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 EPHA3P29320 983 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 FRRS1Q6ZNA5 592 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 MAVSQ7Z434 540 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 ATG4DQ86TL0 474 aaPredicted RBP15.8■□□□□ 0.12
HDDC3-205ENST00000559898 HOMEZQ8IX15 550 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 ZNF527Q8NB42 609 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 OR5W2Q8NH69 310 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 MIPOL1Q8TD10 442 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 TESCQ96BS2 214 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 NMUR2Q9GZQ4 415 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 UBTD1Q9HAC8 227 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 SLC6A13Q9NSD5 602 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 AIG1Q9NVV5 245 aa15.8■□□□□ 0.12
HDDC3-205ENST00000559898 DSCAMO60469 2012 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 PRSS51A0A1B0GVH4 220 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 SNNO75324 88 aaPredicted RBP15.79■□□□□ 0.12
HDDC3-205ENST00000559898 STX11O75558 287 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 GSNP06396 782 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 UQCRC2P22695 453 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 ME2P23368 584 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 ELK4P28324 431 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 HOXC12P31275 282 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 PGM1P36871 562 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 PCYT1AP49585 367 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 TIGD2Q4W5G0 525 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 SLC25A53Q5H9E4 307 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 COX20Q5RI15 118 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 HHATQ5VTY9 493 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 ANKFN1Q8N957 763 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 ZFP90Q8TF47 636 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 SLC35A5Q9BS91 424 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 LAT2Q9GZY6 243 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 GPR45Q9Y5Y3 372 aa15.79■□□□□ 0.12
HDDC3-205ENST00000559898 GPC6Q9Y625 555 aaPredicted RBP15.79■□□□□ 0.12
HDDC3-205ENST00000559898 H3BNH8 94 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 ETV2O00321 342 aaPredicted RBP15.78■□□□□ 0.12
HDDC3-205ENST00000559898 HMGN4O00479 90 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 KIAA0513O60268 411 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 EIF4E2O60573 245 aaKnown RBP15.78■□□□□ 0.12
HDDC3-205ENST00000559898 DNAJA2O60884 412 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 GCM2O75603 506 aaPredicted RBP15.78■□□□□ 0.12
HDDC3-205ENST00000559898 GOSR1O95249 250 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 EIF1P41567 113 aaKnown RBP15.78■□□□□ 0.12
HDDC3-205ENST00000559898 SUMO3P55854 103 aaPredicted RBP15.78■□□□□ 0.12
HDDC3-205ENST00000559898 SESN3P58005 492 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 CHRNEQ04844 493 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 FGFBP1Q14512 234 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 SYPL1Q16563 259 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 SLC9B1Q4ZJI4 515 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 OGFOD2Q6N063 350 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 ALKBH2Q6NS38 261 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 TFAP2EQ6VUC0 442 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 FCRLAQ7L513 359 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 C16orf62Q7Z3J2 963 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 RNF130Q86XS8 419 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 PNPT1Q8TCS8 783 aaKnown RBP15.78■□□□□ 0.12
HDDC3-205ENST00000559898 ROPN1LQ96C74 230 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 NEURL3Q96EH8 262 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 ZNF300Q96RE9 604 aaPredicted RBP15.78■□□□□ 0.12
HDDC3-205ENST00000559898 ZNF226Q9NYT6 803 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 STOML1Q9UBI4 398 aa15.78■□□□□ 0.12
HDDC3-205ENST00000559898 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.77■□□□□ 0.12
HDDC3-205ENST00000559898 E9PBE3 544 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 SMAD9O15198 467 aaKnown RBP15.77■□□□□ 0.12
HDDC3-205ENST00000559898 CSTAP01040 98 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms