RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TNFSF9P41273 254 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 AGTR2P50052 363 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 MECP2P51608 486 aaKnown RBP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 SORDQ00796 357 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 TRA2AQ13595 282 aaKnown RBP eCLIP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 MESTQ5EB52 335 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 SLC25A24Q6NUK1 477 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 CFAP161Q6P656 301 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 SLC35F3Q8IY50 421 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 OR56B1Q8NGI3 324 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 ASB13Q8WXK3 278 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF75AQ96N20 296 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 TMED9Q9BVK6 235 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 DDA1Q9BW61 102 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 SNHG12Q9BXW3 62 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 POLR3FQ9H1D9 316 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 TMEM185BQ9H7F4 350 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D17Q9HA65 648 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 RPS10P5Q9NQ39 176 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 TSPAN16Q9UKR8 245 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 SRCAPQ6ZRS2 3230 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 A0A1W2PPH5 198 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 DUXAA6NLW8 204 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 HEPACAM2A8MVW5 462 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 SULT2B1O00204 365 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 RFXANKO14593 260 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 ETFAP13804 333 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 PPP2R1BP30154 601 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 AGTR1P30556 359 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 ADH7P40394 386 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 CDKN1BP46527 198 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 TDGF1P3P51864 188 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 SUCLG1P53597 346 aaKnown RBP12.87□□□□□ -0.35
SHMT2-226ENST00000556825 NRG3P56975 720 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 OC90Q02509 493 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-226ENST00000556825 VEZF1Q14119 521 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 ARHGAP19Q14CB8 494 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 NDUFA9Q16795 377 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 LANCL3Q6ZV70 420 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF546Q86UE3 836 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 PNPLA1Q8N8W4 532 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 HAVCR2Q8TDQ0 301 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 HASPINQ8TF76 798 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 ZFP3Q96NJ6 502 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 POPDC3Q9HBV1 291 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 ZSCAN32Q9NX65 697 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 FBXL4Q9UKA2 621 aa12.87□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3DA0A087WVF3 549 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3IA0A087WXS9 549 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3EA0A087X179 549 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3KA0A087X1G2 549 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 A0A1W2PPQ1 181 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3FA6NER0 549 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 OR2AT4A6NND4 320 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3LB9A6J9 549 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 RPL36A-HNRNPH2H7BZ11 118 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 SMAD6O43541 496 aaKnown RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 KLK8O60259 260 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 JCHAINP01591 159 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 S100A3P33764 101 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 NDUFA6P56556 154 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 STXBP1P61764 594 aaKnown RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TIAL1Q01085 375 aaKnown RBP eCLIP12.86□□□□□ -0.357e-9■■□□□ 13.1
SHMT2-226ENST00000556825 RING1Q06587 406 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 PJVKQ0ZLH3 352 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 HEPACAMQ14CZ8 416 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TKFCQ3LXA3 575 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 XKR4Q5GH76 650 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 C12orf73Q69YU5 71 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3CQ6IPX1 549 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 KIAA1211LQ6NV74 962 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 THOC6Q86W42 341 aaKnown RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3Q8IZP1 549 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 ZFP41Q8N8Y5 198 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 OR8J1Q8NGP2 316 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 SPPL2AQ8TCT8 520 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 NECAB3Q96P71 396 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 SYT17Q9BSW7 474 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TMEM106CQ9BVX2 250 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TMEM39BQ9GZU3 492 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 UBQLN3Q9H347 655 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 FKRPQ9H9S5 495 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 MEPEQ9NQ76 525 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TMPRSS4Q9NRS4 437 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 ASB6Q9NWX5 421 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 CCL27Q9Y4X3 112 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 DSPPQ9NZW4 1301 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 UBE2QL1A1L167 161 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF726A6NNF4 738 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 EGR3Q06889 387 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 IL10RAQ13651 578 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 SLC9A5Q14940 896 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 TGIF1Q15583 401 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 C2orf68Q2NKX9 166 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 C14orf28Q4W4Y0 310 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 BCDIN3DQ7Z5W3 292 aaKnown RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 GAL3ST3Q96A11 431 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 CPNE2Q96FN4 548 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 CDK15Q96Q40 435 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF471Q9BX82 626 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms