RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 BCHEP06276 602 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 NCF2P19878 526 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-219ENST00000555563 RPS4Y1P22090 263 aaKnown RBP12.33□□□□□ -0.44
SHMT2-219ENST00000555563 SFTPDP35247 375 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 EIF1AXP47813 144 aaKnown RBP12.33□□□□□ -0.44
SHMT2-219ENST00000555563 DLX5P56178 289 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 DSTNP60981 165 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 RPS3AP61247 264 aaKnown RBP12.33□□□□□ -0.44
SHMT2-219ENST00000555563 GUCY1A3Q02108 690 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 CBFBQ13951 182 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 FBXL19-AS1Q494R0 122 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 RPS26P11Q5JNZ5 115 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-219ENST00000555563 PAGE3Q5JUK9 113 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 LRIF1Q5T3J3 769 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 GDF7Q7Z4P5 450 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 DMRTC2Q8IXT2 367 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-219ENST00000555563 ZNF295-AS1Q8N0V1 137 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 OR2V1Q8NHB1 315 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 MRGPRX4Q96LA9 322 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 THUMPD3Q9BV44 507 aaKnown RBP12.33□□□□□ -0.44
SHMT2-219ENST00000555563 TMEM120AQ9BXJ8 343 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 RABEP2Q9H5N1 569 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 SLAMF8Q9P0V8 285 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 STOML1Q9UBI4 398 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 TRIM33Q9UPN9 1127 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 DSPPQ9NZW4 1301 aa12.33□□□□□ -0.44
SHMT2-219ENST00000555563 ITPR2Q14571 2701 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 MED12LQ86YW9 2145 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 A0A0J9YW62 118 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 A0A1W2PP18 115 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 CLIC1O00299 241 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 ETV2O00321 342 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-219ENST00000555563 ADAMDEC1O15204 470 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 EFNA2O43921 213 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 CXCL13O43927 109 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 TNFSF13O75888 250 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 AQP8O94778 261 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 NUDT7P0C024 238 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 FCGR2AP12318 317 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 ADH6P28332 368 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 UQCRC1P31930 480 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 SLC6A8P48029 635 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 KCNJ10P78508 379 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 SELENBP1Q13228 472 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 SGCBQ16585 318 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 SLC25A53Q5H9E4 307 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 OR2A2Q6IF42 318 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 CGB2Q6NT52 195 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 ESPNLQ6ZVH7 1005 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 LILRA2Q8N149 483 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 SLC38A5Q8WUX1 472 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 WDR60Q8WVS4 1066 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 RNASE6Q93091 150 aaKnown RBP12.32□□□□□ -0.44
SHMT2-219ENST00000555563 KLHL15Q96M94 604 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 RNF122Q9H9V4 155 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-219ENST00000555563 JKAMPQ9P055 326 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 VAPAQ9P0L0 249 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 PACSIN3Q9UKS6 424 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 INTS1Q8N201 2190 aaKnown RBP12.32□□□□□ -0.44
SHMT2-219ENST00000555563 HEATR5AQ86XA9 2040 aa12.32□□□□□ -0.44
SHMT2-219ENST00000555563 PKDREJQ9NTG1 2253 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 TRBV5-3A0A0A0MS03 114 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 ADAM11O75078 769 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 TFPTP0C1Z6 253 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 TROVE2P10155 538 aaKnown RBP eCLIP12.31□□□□□ -0.44
SHMT2-219ENST00000555563 BMP2P12643 396 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 NID1P14543 1247 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 CRISP3P54108 245 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 SESN3P58005 492 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 SIRPAP78324 504 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 SF3A3Q12874 501 aaKnown RBP eCLIP12.31□□□□□ -0.444e-13■■□□□ 11.6
SHMT2-219ENST00000555563 FADDQ13158 208 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 SNTB1Q13884 538 aaKnown RBP12.31□□□□□ -0.44
SHMT2-219ENST00000555563 RGNQ15493 299 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 MRPL2Q5T653 305 aaKnown RBP12.31□□□□□ -0.44
SHMT2-219ENST00000555563 HBMQ6B0K9 141 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 PPP4R4Q6NUP7 873 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 VWA1Q6PCB0 445 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 CMIPQ8IY22 773 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 PEX5LQ8IYB4 626 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 C10orf111Q8N326 155 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 ATP6V1C2Q8NEY4 427 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 ST8SIA1Q92185 356 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 CNOT9Q92600 299 aaKnown RBP12.31□□□□□ -0.44
SHMT2-219ENST00000555563 MAL2Q969L2 176 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 C14orf79Q96F83 325 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 TMEM19Q96HH6 336 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 RAD21L1Q9H4I0 556 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 CCDC134Q9H6E4 229 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 MTHFD2LQ9H903 347 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-219ENST00000555563 EXOSC3Q9NQT5 275 aaKnown RBP12.31□□□□□ -0.44
SHMT2-219ENST00000555563 THUMPD1Q9NXG2 353 aaKnown RBP12.31□□□□□ -0.44
SHMT2-219ENST00000555563 DNAJB12Q9NXW2 375 aaKnown RBP12.31□□□□□ -0.44
SHMT2-219ENST00000555563 CALML5Q9NZT1 146 aa12.31□□□□□ -0.44
SHMT2-219ENST00000555563 GJE1A6NN92 205 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 SYT5O00445 386 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 CRHP06850 196 aa12.3□□□□□ -0.44
SHMT2-219ENST00000555563 DBIP07108 87 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms