RNA–Protein interactions for RNA: ENST00000554659.5

VTI1B-204, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTI1B, Length 5,351 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-204ENST00000554659 RAB3AP20336 220 aa13.09□□□□□ -0.31
VTI1B-204ENST00000554659 PAQR9Q6ZVX9 377 aa13.09□□□□□ -0.31
VTI1B-204ENST00000554659 HRASLS5Q96KN8 279 aa13.09□□□□□ -0.31
VTI1B-204ENST00000554659 GPATCH2Q9NW75 528 aa13.09□□□□□ -0.31
VTI1B-204ENST00000554659 KCNIP1Q9NZI2 227 aa13.09□□□□□ -0.31
VTI1B-204ENST00000554659 ATG4BQ9Y4P1 393 aa13.09□□□□□ -0.31
VTI1B-204ENST00000554659 DCDC2BA2VCK2 349 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 ARHGAP33O14559 1287 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 OR2T1O43869 369 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 ONECUT3O60422 494 aaPredicted RBP13.08□□□□□ -0.31
VTI1B-204ENST00000554659 GMDSO60547 372 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 RAB40ALP0C0E4 278 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 TPT1P13693 172 aaKnown RBP13.08□□□□□ -0.31
VTI1B-204ENST00000554659 EPHA1P21709 976 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 PSPHP78330 225 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 TLE3Q04726 772 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 SGPP2Q8IWX5 399 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 OR51T1Q8NGJ9 327 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 RAB40AQ8WXH6 277 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 SPIN2AQ99865 258 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 SPIN2BQ9BPZ2 258 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 PPA2Q9H2U2 334 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 IL23AQ9NPF7 189 aa13.08□□□□□ -0.31
VTI1B-204ENST00000554659 J3KTA2 159 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 MT-ND4P03905 459 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ARSBP15848 533 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ZNF43P17038 809 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 AHRP35869 848 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 HNRNPA1L2Q32P51 320 aaKnown RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 C3orf38Q5JPI3 329 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ALKAL1Q6UXT8 129 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 MYLIPQ8WY64 445 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 C3orf49Q96BT1 292 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ELP4Q96EB1 424 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ACTR10Q9NZ32 417 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 USP22Q9UPT9 525 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 SLC16A6O15403 523 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 AQP9O43315 295 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 SEC14L2O76054 403 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 SCG5P05408 212 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 SNRNP70P08621 437 aaKnown RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 GAAP10253 952 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 TIMP2P16035 220 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 JUNBP17275 347 aaPredicted RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 HIST1H1TP22492 207 aaPredicted RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 COL9A2Q14055 689 aaPredicted RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ZNF585AQ6P3V2 769 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 NRARPQ7Z6K4 114 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 TMEM151BQ8IW70 566 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 OR4D6Q8NGJ1 314 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 FOXRED1Q96CU9 486 aaPredicted RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 BTBD2Q9BX70 525 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 GCM1Q9NP62 436 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 OR6C2Q9NZP2 312 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 A0A0J9YY10 115 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ZBTB42B2RXF5 422 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 GPR39O43194 453 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 CRTAPO75718 401 aaPredicted RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 GABARAPO95166 117 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 HNRNPA2B1P22626 353 aaKnown RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 SSTR2P30874 369 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 PSMB10P40306 273 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ETV5P41161 510 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 IRF4Q15306 451 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 FAM69BQ5VUD6 431 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 MEX3DQ86XN8 651 aaKnown RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 CLDN22Q8N7P3 220 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ZNF337Q9Y3M9 751 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 NAALAD2Q9Y3Q0 740 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 PCYT1BQ9Y5K3 369 aaPredicted RBP13.08□□□□□ -0.32
VTI1B-204ENST00000554659 MPIG6BO95866 241 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 GALEQ14376 348 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 SYPL1Q16563 259 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 SLC46A3Q7Z3Q1 461 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 ZNF695Q8IW36 515 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 WDSUB1Q8N9V3 476 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 PAQR8Q8TEZ7 354 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 LPAR4Q99677 370 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 LINC00597Q9H2U6 94 aa13.08□□□□□ -0.32
VTI1B-204ENST00000554659 FTCDNL1E5RQL4 147 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 GAPDHSO14556 408 aaPredicted RBP13.07□□□□□ -0.32
VTI1B-204ENST00000554659 RAD1O60671 282 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 ACTL6BO94805 426 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 GASTP01350 101 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 SERPINA7P05543 415 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 HTD2P86397 168 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 FAPQ12884 760 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 PLK5Q496M5 336 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 UBE2NLQ5JXB2 153 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 TMEM244Q5VVB8 128 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 PARS2Q7L3T8 475 aaKnown RBP13.07□□□□□ -0.32
VTI1B-204ENST00000554659 SERPINA12Q8IW75 414 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 SIMC1Q8NDZ2 872 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 OR52E1Q8NGJ3 308 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 DIO2Q92813 273 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 SPTSSAQ969W0 71 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 ZNF419Q96HQ0 510 aaPredicted RBP13.07□□□□□ -0.32
VTI1B-204ENST00000554659 APOOQ9BUR5 198 aa13.07□□□□□ -0.32
VTI1B-204ENST00000554659 HEMK1Q9Y5R4 338 aaPredicted RBP13.07□□□□□ -0.32
VTI1B-204ENST00000554659 CDHR4A6H8M9 788 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms