RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 ZFP64Q9NPA5 681 aa13.22□□□□□ -0.29
SHMT2-210ENST00000553950 C8orf4Q9NR00 106 aa13.22□□□□□ -0.29
SHMT2-210ENST00000553950 TAS2R10Q9NYW0 307 aa13.22□□□□□ -0.29
SHMT2-210ENST00000553950 PLA2G3Q9NZ20 509 aa13.22□□□□□ -0.29
SHMT2-210ENST00000553950 ANKRD11Q6UB99 2663 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 A0A1W2PRQ8 180 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 C7orf72A4D263 438 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 CPSF4LA6NMK7 179 aaKnown RBP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 TAF4O00268 1085 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 ADAM10O14672 748 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 ATP6V1G2O95670 118 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 BAG2O95816 211 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 MT-ND1P03886 318 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 SFTPCP11686 197 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 GP1BBP13224 206 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 ZNF17P17021 662 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 RRM2P31350 389 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 RYKP34925 604 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 GCKP35557 465 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 ACAA2P42765 397 aaKnown RBP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 SLC1A3P43003 542 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 RNF144AP50876 292 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 MAP2K6P52564 334 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 DSCR4P56555 118 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 KCNAB2Q13303 367 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 DGCR6Q14129 220 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 ZNF169Q14929 603 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 OR1Q1Q15612 314 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 NDUFAF6Q330K2 333 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 ALG10BQ5I7T1 473 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 CBLN3Q6UW01 205 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 GRINAQ7Z429 371 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 ZNF605Q86T29 641 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 CADM2Q8N3J6 435 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 OR4D11Q8NGI4 311 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 C9orf43Q8TAL5 461 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 C1GALT1C1Q96EU7 318 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 NRBF2Q96F24 287 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 SLC41A3Q96GZ6 507 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 MRGPRX4Q96LA9 322 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 VCXQ9H320 206 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 VCX3BQ9H321 246 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 QPCTLQ9NXS2 382 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 STOML1Q9UBI4 398 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 DKKL1Q9UK85 242 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 TMCC3Q9ULS5 477 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 A4GNTQ9UNA3 340 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 C15orf41Q9Y2V0 281 aa13.21□□□□□ -0.29
SHMT2-210ENST00000553950 SAMHD1Q9Y3Z3 626 aaKnown RBP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 SPIN1Q9Y657 262 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-210ENST00000553950 ASPMQ8IZT6 3477 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 A0A0B4J2E0 115 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 A0A1B0GX12 115 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 HTR3EA5X5Y0 456 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 ARRDC5A6NEK1 342 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 ETV2O00321 342 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 GNB5O14775 395 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 PEX1O43933 1283 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 BCAS1O75363 584 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 PRSS23O95084 383 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 F10P00742 488 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 FPR1P21462 350 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 FKBP2P26885 142 aaKnown RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 HTR2AP28223 471 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 ELK4P28324 431 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 ADH6P28332 368 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 SRD5A2P31213 254 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 DNAJA1P31689 397 aaKnown RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 IFNGR2P38484 337 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 RBM34P42696 430 aaKnown RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 IDH2P48735 452 aaKnown RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 DNASE1L1P49184 302 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 POLR2HP52434 150 aaKnown RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 CDH12P55289 794 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 DLX5P56178 289 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 QPRTQ15274 297 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 GLYR1Q49A26 553 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 IQCCQ4KMZ1 466 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 FGD3Q5JSP0 725 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 C5orf46Q6UWT4 87 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 GALNTL5Q7Z4T8 443 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 SLC22A16Q86VW1 577 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 CATSPER1Q8NEC5 780 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 LRTOMTQ8WZ04 291 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 EXTL1Q92935 676 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 SLC38A4Q969I6 547 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 JSRP1Q96MG2 331 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 HS6ST2Q96MM7 605 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 RSPO3Q9BXY4 272 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 RTN4RQ9BZR6 473 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 DSN1Q9H410 356 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 PROK2Q9HC23 129 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 KLHL1Q9NR64 748 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 ACER3Q9NUN7 267 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 RIMS3Q9UJD0 308 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 MRPS18CQ9Y3D5 142 aaKnown RBP13.2□□□□□ -0.3
SHMT2-210ENST00000553950 TESMINQ9Y4I5 508 aa13.2□□□□□ -0.3
SHMT2-210ENST00000553950 MPDZO75970 2070 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms