RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 TBC1D3GQ6DHY5 549 aa16.28■□□□□ 0.2
SYNE3-202ENST00000553340 CDH24Q86UP0 819 aa16.28■□□□□ 0.2
SYNE3-202ENST00000553340 BPHLQ86WA6 291 aaPredicted RBP16.28■□□□□ 0.2
SYNE3-202ENST00000553340 NRROSQ86YC3 692 aa16.28■□□□□ 0.2
SYNE3-202ENST00000553340 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.28■□□□□ 0.2
SYNE3-202ENST00000553340 OR2L8Q8NGY9 312 aa16.28■□□□□ 0.2
SYNE3-202ENST00000553340 PFN4Q8NHR9 129 aa16.28■□□□□ 0.2
SYNE3-202ENST00000553340 C6orf106Q9H6K1 298 aaPredicted RBP16.28■□□□□ 0.2
SYNE3-202ENST00000553340 ADGRL4Q9HBW9 690 aa16.28■□□□□ 0.2
SYNE3-202ENST00000553340 SLC6A20Q9NP91 592 aa16.28■□□□□ 0.2
SYNE3-202ENST00000553340 ZNF275Q9NSD4 429 aaPredicted RBP16.28■□□□□ 0.2
SYNE3-202ENST00000553340 C20orf141Q9NUB4 165 aa16.28■□□□□ 0.2
SYNE3-202ENST00000553340 EVA1BQ9NVM1 165 aa16.28■□□□□ 0.2
SYNE3-202ENST00000553340 MDC1Q14676 2089 aaKnown RBP16.27■□□□□ 0.2
SYNE3-202ENST00000553340 HYAL3O43820 417 aaPredicted RBP16.27■□□□□ 0.2
SYNE3-202ENST00000553340 ANKRD34CP0C6C1 535 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 UBL4AP11441 157 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 NTHL1P78549 312 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 PUDPQ08623 228 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 SUZ12Q15022 739 aaKnown RBP16.27■□□□□ 0.2
SYNE3-202ENST00000553340 CDK20Q8IZL9 346 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 LSMEM1Q8N8F7 131 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 OR7G2Q8NG99 324 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 OR4D9Q8NGE8 314 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 OR2T35Q8NGX2 323 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 CEP76Q8TAP6 659 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 SMPDL3BQ92485 455 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 RAB11FIP5Q9BXF6 653 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 ZNF224Q9NZL3 707 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 EMC3Q9P0I2 261 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 PRELID1Q9Y255 219 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 SLC35A3Q9Y2D2 325 aa16.27■□□□□ 0.2
SYNE3-202ENST00000553340 A0A1W2PRG6 482 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 RIIAD1A6NNX1 92 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 GSTZ1O43708 216 aaPredicted RBP16.27■□□□□ 0.19
SYNE3-202ENST00000553340 EPXP11678 715 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 P2RY2P41231 377 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 ACTC1P68032 377 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 EEF1A1P68104 462 aaKnown RBP16.27■□□□□ 0.19
SYNE3-202ENST00000553340 ACTA1P68133 377 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 TAGLNQ01995 201 aaKnown RBP16.27■□□□□ 0.19
SYNE3-202ENST00000553340 DUSP8Q13202 625 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 KLF9Q13886 244 aaPredicted RBP16.27■□□□□ 0.19
SYNE3-202ENST00000553340 KRT33BQ14525 404 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 MFSD13AQ14CX5 517 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 MAPK14Q16539 360 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 ZSWIM7Q19AV6 140 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 ARHGAP11BQ3KRB8 267 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 WDR88Q6ZMY6 472 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 ANKRD33Q7Z3H0 272 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 LSRQ86X29 649 aaPredicted RBP16.27■□□□□ 0.19
SYNE3-202ENST00000553340 OR13C5Q8NGS8 318 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 OR5J2Q8NH18 312 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 PCNPQ8WW12 178 aaKnown RBP16.27■□□□□ 0.19
SYNE3-202ENST00000553340 COL26A1Q96A83 441 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 RBP7Q96R05 134 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 ZNF436Q9C0F3 470 aaPredicted RBP16.27■□□□□ 0.19
SYNE3-202ENST00000553340 CLDND1Q9NY35 253 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 MAB21L2Q9Y586 359 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 NPTNQ9Y639 398 aa16.27■□□□□ 0.19
SYNE3-202ENST00000553340 A0A0B4J203 849 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 FLRT2O43155 660 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 WNT1P04628 370 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 DRD5P21918 477 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 LCN1P31025 176 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 VSX2P58304 361 aaPredicted RBP16.26■□□□□ 0.19
SYNE3-202ENST00000553340 GPR68Q15743 365 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 THSD4Q6ZMP0 1018 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 OR51Q1Q8NH59 317 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 ERMAPQ96PL5 475 aaPredicted RBP16.26■□□□□ 0.19
SYNE3-202ENST00000553340 BEX1Q9HBH7 125 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 LYARQ9NX58 379 aaKnown RBP16.26■□□□□ 0.19
SYNE3-202ENST00000553340 APOBEC3BQ9UH17 382 aaKnown RBP16.26■□□□□ 0.19
SYNE3-202ENST00000553340 A0A1W2PPK0 400 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 PEX14O75381 377 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 ARL6IP5O75915 188 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 ADH1CP00326 375 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 THBS1P07996 1170 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 CLTBP09497 229 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 RRASP10301 218 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 NOS3P29474 1203 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 ZNF267Q14586 743 aaPredicted RBP16.26■□□□□ 0.19
SYNE3-202ENST00000553340 ESPNLQ6ZVH7 1005 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 SLC51BQ86UW2 128 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 HDDC3Q8N4P3 179 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 OR4C6Q8NH72 309 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 SMAP2Q8WU79 429 aaPredicted RBP16.26■□□□□ 0.19
SYNE3-202ENST00000553340 SMIM4Q8WVI0 70 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 C20orf85Q9H1P6 137 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 C12orf10Q9HB07 376 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 SPATA2Q9UM82 520 aa16.26■□□□□ 0.19
SYNE3-202ENST00000553340 CENPVL1A0A0U1RR11 272 aa16.25■□□□□ 0.19
SYNE3-202ENST00000553340 IGLON5A6NGN9 336 aa16.25■□□□□ 0.19
SYNE3-202ENST00000553340 CTDSPLO15194 276 aa16.25■□□□□ 0.19
SYNE3-202ENST00000553340 ASGR2P07307 311 aa16.25■□□□□ 0.19
SYNE3-202ENST00000553340 CLUP10909 449 aa16.25■□□□□ 0.19
SYNE3-202ENST00000553340 IL9P15248 144 aa16.25■□□□□ 0.19
SYNE3-202ENST00000553340 HTR2AP28223 471 aa16.25■□□□□ 0.19
SYNE3-202ENST00000553340 BMP8BP34820 402 aa16.25■□□□□ 0.19
SYNE3-202ENST00000553340 ZP1P60852 638 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms