RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 AUNIPQ9H7T9 357 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 SLC6A20Q9NP91 592 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 DLL4Q9NR61 685 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 KLHL1Q9NR64 748 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 MRPL15Q9P015 296 aaKnown RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 APOBEC3BQ9UH17 382 aaKnown RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF223Q9UK11 482 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 FLVCR2Q9UPI3 526 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PLEKHM1Q9Y4G2 1056 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 STON1Q9Y6Q2 735 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 RNF215Q9Y6U7 377 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 EML5Q05BV3 1969 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 MEIKINA0A087WXM9 373 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 DAPL1A0PJW8 107 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 CARNS1A5YM72 827 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 CDHR4A6H8M9 788 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 J3QLW9 94 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF593O00488 134 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 EMC8O43402 210 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 GMDSO60547 372 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 DNAJB6O75190 326 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 LYPD3O95274 346 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 CXCL14O95715 111 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 HRGP04196 525 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 RPN2P04844 631 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PCCBP05166 539 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 RHOP08100 348 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 SULT1A3P0DMM9 295 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 SULT1A4P0DMN0 295 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PEPDP12955 493 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF19P17023 458 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 LAG3P18627 525 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 POLR2CP19387 275 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PAICSP22234 425 aaKnown RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 TEAD1P28347 426 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PRKAR1BP31321 381 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF81P51508 661 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ARFIP1P53367 373 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ERVK-21P61565 698 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 SIM1P81133 766 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PUDPQ08623 228 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 AANATQ16613 207 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ACSM3Q53FZ2 586 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PRPF38BQ5VTL8 546 aaKnown RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 CDC73Q6P1J9 531 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 SLC48A1Q6P1K1 146 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ERN2Q76MJ5 926 aaKnown RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 C16orf62Q7Z3J2 963 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 LUZP2Q86TE4 346 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 COMMD7Q86VX2 200 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 CACUL1Q86Y37 369 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 GID4Q8IVV7 300 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ARL14Q8N4G2 192 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 LSMEM1Q8N8F7 131 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF527Q8NB42 609 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 CYB561A3Q8NBI2 242 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 TOR1AIP2Q8NFQ8 470 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 OR7G2Q8NG99 324 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 OR56A1Q8NGH5 318 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 BRIX1Q8TDN6 353 aaKnown RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PXYLP1Q8TE99 480 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ORAI1Q96D31 301 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 RSPRY1Q96DX4 576 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 WDR89Q96FK6 387 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 C4orf36Q96KX1 117 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 TEAD3Q99594 435 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 CACNG6Q9BXT2 260 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 GSDMCQ9BYG8 508 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 OR51V1Q9H2C8 321 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 TRIM36Q9NQ86 728 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 TMEM74BQ9NUR3 256 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 FBXO34Q9NWN3 711 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 SIDT1Q9NXL6 827 aaKnown RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 KLHL28Q9NXS3 571 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 CALML5Q9NZT1 146 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 COPZ2Q9P299 210 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ABT1Q9ULW3 272 aaKnown RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 SCML1Q9UN30 329 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF443Q9Y2A4 671 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 REV3LO60673 3130 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PTPRSQ13332 1948 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 NPIPA5A0A0B4J1W7 369 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 A0A1B0GVI7 797 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 A0A1W2PRG6 482 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 UNC119BA6NIH7 251 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 NPIPA7E9PJI5 369 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 SCAMP1O15126 338 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 OR5F1O95221 314 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PRNPP04156 253 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 LINC00271P0C7V0 271 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 NPIPA8P0DM63 369 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 CSNK2A2P19784 350 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 DNASE1P24855 282 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PEBP1P30086 187 aaKnown RBP5.02□□□□□ -1.61
LIMA1-212ENST00000552491 MMP15P51511 669 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 SLC16A1P53985 500 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 RAG2P55895 527 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 ERVFC1P60507 584 aa5.02□□□□□ -1.61
LIMA1-212ENST00000552491 PRR5P85299 388 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms