RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ZNF638Q14966 1978 aaKnown RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 PLXNA1Q9UIW2 1896 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 MYF5P13349 255 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 PDE7AQ13946 482 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 SAXO2Q658L1 398 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 SFRP4Q6FHJ7 346 aaPredicted RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 SLC46A3Q7Z3Q1 461 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 TMEM234Q8WY98 164 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 S100A16Q96FQ6 103 aaKnown RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 ZNF582Q96NG8 517 aaPredicted RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 TMEFF2Q9UIK5 374 aaPredicted RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 RBM7Q9Y580 266 aaKnown RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 A0A1B0GWA3 101 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 HPGDSO60760 199 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 WISP3O95389 354 aaPredicted RBP13.96□□□□□ -0.17
CUX1-214ENST00000550008 RAB3BP20337 219 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 CCNOP22674 350 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 SGCAQ16586 387 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 PRSS36Q5K4E3 855 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 SLC25A25Q6KCM7 469 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 DNM1P34Q6PK57 102 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 LAX1Q8IWV1 398 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 FAM83FQ8NEG4 500 aaPredicted RBP13.96□□□□□ -0.17
CUX1-214ENST00000550008 WDR77Q9BQA1 342 aaPredicted RBP13.96□□□□□ -0.17
CUX1-214ENST00000550008 SLC6A20Q9NP91 592 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 IFT46Q9NQC8 304 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 DOCK6Q96HP0 2047 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 A0A1W2PQ09 198 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 LAMTOR5O43504 91 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 GABARAPO95166 117 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 HYAL1Q12794 435 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 ELOAQ14241 798 aaKnown RBP13.96□□□□□ -0.17
CUX1-214ENST00000550008 CALHM3Q86XJ0 350 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 CRISPLD2Q9H0B8 497 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 FN3KQ9H479 309 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 PIGUQ9H490 435 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 PTGES2Q9H7Z7 377 aa13.96□□□□□ -0.17
CUX1-214ENST00000550008 C2orf72A6NCS6 295 aa13.96□□□□□ -0.18
CUX1-214ENST00000550008 HYAL3O43820 417 aaPredicted RBP13.96□□□□□ -0.18
CUX1-214ENST00000550008 UBL4AP11441 157 aa13.96□□□□□ -0.18
CUX1-214ENST00000550008 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.96□□□□□ -0.181e-6■□□□□ 9
CUX1-214ENST00000550008 KLHL26Q53HC5 615 aa13.96□□□□□ -0.18
CUX1-214ENST00000550008 SYT6Q5T7P8 510 aaPredicted RBP13.96□□□□□ -0.18
CUX1-214ENST00000550008 ZNF793Q6ZN11 406 aa13.96□□□□□ -0.18
CUX1-214ENST00000550008 ZG16BQ96DA0 208 aa13.96□□□□□ -0.18
CUX1-214ENST00000550008 PELOQ9BRX2 385 aaKnown RBP13.96□□□□□ -0.18
CUX1-214ENST00000550008 CUTCQ9NTM9 273 aa13.96□□□□□ -0.18
CUX1-214ENST00000550008 ZNF69Q9UC07 566 aa13.96□□□□□ -0.18
CUX1-214ENST00000550008 SEC14L5O43304 696 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 SLC2A10O95528 541 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 ACP2P11117 423 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 TDGQ13569 410 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 ETFBKMTQ8IXQ9 262 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 PFN4Q8NHR9 129 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 SMAP2Q8WU79 429 aaPredicted RBP13.95□□□□□ -0.18
CUX1-214ENST00000550008 ATOH1Q92858 354 aaPredicted RBP13.95□□□□□ -0.18
CUX1-214ENST00000550008 ZFC3H1O60293 1989 aaKnown RBP13.95□□□□□ -0.18
CUX1-214ENST00000550008 ISPDA4D126 451 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 TEAD1P28347 426 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 BTBD16Q32M84 506 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 ACSM3Q53FZ2 586 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 ULK3Q6PHR2 472 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 ARMC10Q8N2F6 343 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 SLAMF7Q9NQ25 335 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 CCL27Q9Y4X3 112 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 IGHV3-20A0A0C4DH32 117 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 ECDO95905 644 aaPredicted RBP13.95□□□□□ -0.18
CUX1-214ENST00000550008 JMJD7P0C870 316 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 S1PR1P21453 382 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 NR4A2P43354 598 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 GBX1Q14549 363 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 SEC23BQ15437 767 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 NLGN4YQ8NFZ3 816 aaPredicted RBP13.95□□□□□ -0.18
CUX1-214ENST00000550008 OR2T4Q8NH00 348 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 LMF1Q96S06 567 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 ELF4Q99607 663 aaPredicted RBP13.95□□□□□ -0.18
CUX1-214ENST00000550008 KATNB1Q9BVA0 655 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 TEX101Q9BY14 249 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 DUSP21Q9H596 190 aa13.95□□□□□ -0.18
CUX1-214ENST00000550008 OR2A25A4D2G3 310 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 NRG2O14511 850 aaPredicted RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 DOK2O60496 412 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 VAMP1P23763 118 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 IDUAP35475 653 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 SLC1A3P43003 542 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 RPS5P46782 204 aaKnown RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 BTG2P78543 158 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 RAET1LQ5VY80 246 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 PJA1Q8NG27 643 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 TRMT10AQ8TBZ6 339 aaKnown RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 ZNF304Q9HCX3 659 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 C19orf25Q9UFG5 118 aaPredicted RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 NUFIP1Q9UHK0 495 aaKnown RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 RBBP6Q7Z6E9 1792 aaKnown RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 LRRN3E7EW58 273 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 GREM1O60565 184 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 PLATP00750 562 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 HCKP08631 526 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 AQP2P41181 271 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 GMFBP60983 142 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms