RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CYTIPO60759 359 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 RSL1D1O76021 490 aaKnown RBP14.91□□□□□ -0.02
VPS29-204ENST00000548259 SBK3P0C264 359 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 ACP2P11117 423 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 PRKAA2P54646 552 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 NAA20P61599 178 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 ZNF117Q03924 483 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 TRADDQ15628 312 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 DUSP5Q16690 384 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 FAM219BQ5XKK7 198 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 FBXW9Q5XUX1 488 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 LRIG3Q6UXM1 1119 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 IL17RELQ6ZVW7 336 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 TMEM151AQ8N4L1 468 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 ZNF433Q8N7K0 673 aaPredicted RBP14.91□□□□□ -0.02
VPS29-204ENST00000548259 TOR1AIP2Q8NFQ8 470 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 OR52N5Q8NH56 324 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 PPCDCQ96CD2 204 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 FUT8Q9BYC5 575 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 COQ10BQ9H8M1 238 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 MID1IP1Q9NPA3 183 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 SERINC1Q9NRX5 453 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 ALPK2Q86TB3 2170 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 C9JVG2 144 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 M0R1B8 84 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 SEC22BO75396 215 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 RAD51DO75771 328 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 GSTA1P08263 222 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 APOBEC3AP31941 199 aaPredicted RBP14.9□□□□□ -0.02
VPS29-204ENST00000548259 CSNK2A1P68400 391 aaPredicted RBP14.9□□□□□ -0.02
VPS29-204ENST00000548259 SRSF2Q01130 221 aaKnown RBP14.9□□□□□ -0.02
VPS29-204ENST00000548259 IQCCQ4KMZ1 466 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 C3orf33Q6P1S2 294 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 C12orf54Q6X4T0 127 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 TRIM46Q7Z4K8 759 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 ZAR1Q86SH2 424 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 APH1AQ96BI3 265 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 ZNF775Q96BV0 537 aaPredicted RBP14.9□□□□□ -0.02
VPS29-204ENST00000548259 CCDC126Q96EE4 140 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 ZHX1-C8orf76Q96EF9 292 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 L3HYPDHQ96EM0 354 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 OR5B2Q96R09 309 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 KCNA7Q96RP8 456 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 MYOZ1Q9NP98 299 aaPredicted RBP14.9□□□□□ -0.02
VPS29-204ENST00000548259 DUSP22Q9NRW4 184 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 ACSS1Q9NUB1 689 aaPredicted RBP14.9□□□□□ -0.02
VPS29-204ENST00000548259 ASB6Q9NWX5 421 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 TAS2R16Q9NYV7 291 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 SH3BP4Q9P0V3 963 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 CARD8Q9Y2G2 431 aa14.9□□□□□ -0.02
VPS29-204ENST00000548259 A0A1W2PNR3 127 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 GPR171O14626 319 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 EFNA2O43921 213 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 TGFAP01135 160 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 PRKCAP17252 672 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 NR4A2P43354 598 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 CBFBQ13951 182 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 CCNJQ5T5M9 372 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 C1QTNF12Q5T7M4 302 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 RELL1Q8IUW5 271 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 TMCO5AQ8N6Q1 288 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 CCNYL1Q8N7R7 359 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 GPR119Q8TDV5 335 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 C3orf49Q96BT1 292 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 MSI2Q96DH6 328 aaKnown RBP14.89□□□□□ -0.03
VPS29-204ENST00000548259 ZNF300Q96RE9 604 aaPredicted RBP14.89□□□□□ -0.03
VPS29-204ENST00000548259 STACQ99469 402 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 C12orf65Q9H3J6 166 aaKnown RBP14.89□□□□□ -0.03
VPS29-204ENST00000548259 EML4Q9HC35 981 aaKnown RBP14.89□□□□□ -0.03
VPS29-204ENST00000548259 ICAM5Q9UMF0 924 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 NOSIPQ9Y314 301 aaKnown RBP14.89□□□□□ -0.03
VPS29-204ENST00000548259 SLC25A15Q9Y619 301 aa14.89□□□□□ -0.03
VPS29-204ENST00000548259 PCNX3Q9H6A9 2034 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 SLC35F4A4IF30 521 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 SMAD9O15198 467 aaKnown RBP14.88□□□□□ -0.03
VPS29-204ENST00000548259 KRT16P08779 473 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 SRP14P37108 136 aaKnown RBP14.88□□□□□ -0.03
VPS29-204ENST00000548259 CCR4P51679 360 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 CARTPTQ16568 116 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 KLHL26Q53HC5 615 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 CBLN3Q6UW01 205 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 ZNF614Q8N883 585 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 OR5W2Q8NH69 310 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 CIDECQ96AQ7 238 aaPredicted RBP14.88□□□□□ -0.03
VPS29-204ENST00000548259 GIMAP5Q96F15 307 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 REEP4Q9H6H4 257 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 ZDHHC18Q9NUE0 388 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 GIN1Q9NXP7 522 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 TMEM216Q9P0N5 145 aa14.88□□□□□ -0.03
VPS29-204ENST00000548259 ING1Q9UK53 422 aaPredicted RBP14.88□□□□□ -0.03
VPS29-204ENST00000548259 LOC390937A0A1W2PQ73 354 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 SULT2B1O00204 365 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 SPRY1O43609 319 aaPredicted RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 EIF4E2O60573 245 aaKnown RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 TBX19O60806 448 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 ATP12AP54707 1039 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 SNRPD2P62316 118 aaKnown RBP14.87□□□□□ -0.03
VPS29-204ENST00000548259 PHC1P78364 1004 aa14.87□□□□□ -0.03
VPS29-204ENST00000548259 TGFBR3Q03167 851 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms