RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 DECR1Q16698 335 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 ASPGQ86U10 573 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 BPIFA2Q96DR5 249 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 NKX3-1Q99801 234 aaPredicted RBP13.94□□□□□ -0.18
USP28-214ENST00000545540 PDCD1LG2Q9BQ51 273 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 CFHR5Q9BXR6 569 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 TEX12Q9BXU0 123 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 MTHFD2LQ9H903 347 aaPredicted RBP13.94□□□□□ -0.18
USP28-214ENST00000545540 ADAM18Q9Y3Q7 739 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 CXCL3P19876 107 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 SSTR2P30874 369 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 RNLSQ5VYX0 342 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 GATSQ8NAP1 163 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 TTLQ8NG68 377 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 OR52L1Q8NGH7 329 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 ZNRF4Q8WWF5 429 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 CACYBPQ9HB71 228 aaKnown RBP13.94□□□□□ -0.18
USP28-214ENST00000545540 MRPS18AQ9NVS2 196 aaKnown RBP13.94□□□□□ -0.18
USP28-214ENST00000545540 ZMIZ1Q9ULJ6 1067 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 CELSR3Q9NYQ7 3312 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 PRR23D1E9PI22 279 aaPredicted RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 PRR23D2P0DMB1 279 aaPredicted RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 PPM1FP49593 454 aaPredicted RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 TRA2BP62995 288 aaKnown RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 ZSWIM7Q19AV6 140 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 PARM1Q6UWI2 310 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 MEPCEQ7L2J0 689 aaKnown RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 YAF2Q8IY57 180 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 TRMT10AQ8TBZ6 339 aaKnown RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 GHSRQ92847 366 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 MED18Q9BUE0 208 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 NT5DC2Q9H857 520 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 SGK494L7N484 410 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 RGS9O75916 674 aaPredicted RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 ADRB1P08588 477 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 FAM157BP0CG42 384 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 TYRP1P17643 537 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 GIFP27352 417 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 DGCR2P98153 550 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 ADAM15Q13444 863 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 DCST2Q5T1A1 773 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 LAMTOR1Q6IAA8 161 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 LINC00471Q8N535 108 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 METTL27Q8N6F8 245 aaPredicted RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 IL17RCQ8NAC3 791 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 HSD17B8Q92506 261 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 RAB7BQ96AH8 199 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 HS6ST2Q96MM7 605 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 GSDMCQ9BYG8 508 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 CRISPLD2Q9H0B8 497 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 A0A1B0GVT2 93 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 EFCAB14O75071 495 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 ZNF780AO75290 641 aaPredicted RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 NGFRP08138 427 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 MLLT3P42568 568 aaPredicted RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 GZMKP49863 264 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 PRMT2P55345 433 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 MRPL28Q13084 256 aaKnown RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 ODF4Q2M2E3 257 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 SFXN4Q6P4A7 337 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 REM2Q8IYK8 340 aaPredicted RBP13.93□□□□□ -0.18
USP28-214ENST00000545540 MFSD9Q8NBP5 474 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 OR52E2Q8NGJ4 325 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 ABHD4Q8TB40 342 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 MS4A4EQ96PG1 132 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 SOSTQ9BQB4 213 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 FKRPQ9H9S5 495 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 ACOXLQ9NUZ1 547 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 KCMF1Q9P0J7 381 aa13.93□□□□□ -0.18
USP28-214ENST00000545540 PRSS38A1L453 326 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 KLF4O43474 513 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 MT-ND4P03905 459 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 SLC35G6P0C7Q6 338 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 PRKAR1BP31321 381 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 RRAS2P62070 204 aaPredicted RBP13.92□□□□□ -0.18
USP28-214ENST00000545540 PLAURQ03405 335 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 ACSM3Q53FZ2 586 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 MZT2AQ6P582 158 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 MRGPREQ86SM8 312 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 OR8H1Q8NGG4 311 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 SFXN5Q8TD22 340 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 KISS1RQ969F8 398 aaPredicted RBP13.92□□□□□ -0.18
USP28-214ENST00000545540 CLIP3Q96DZ5 547 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 SLC25A18Q9H1K4 315 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 CACNB4O00305 520 aaPredicted RBP13.92□□□□□ -0.18
USP28-214ENST00000545540 SYT5O00445 386 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 IGHA1P01876 353 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 POU3F3P20264 500 aaPredicted RBP13.92□□□□□ -0.18
USP28-214ENST00000545540 TALDO1P37837 337 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 LSSP48449 732 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 NTRK2Q16620 822 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 DUSP6Q16828 381 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 SFRP4Q6FHJ7 346 aaPredicted RBP13.92□□□□□ -0.18
USP28-214ENST00000545540 ZNF425Q6IV72 752 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 ZNF433Q8N7K0 673 aaPredicted RBP13.92□□□□□ -0.18
USP28-214ENST00000545540 SMPDL3BQ92485 455 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 BRD7Q9NPI1 651 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 BHLHE40O14503 412 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 LINC01565O15544 149 aa13.92□□□□□ -0.18
USP28-214ENST00000545540 ORC5O43913 435 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms