RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C22orf42Q6IC83 251 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 USP30Q70CQ3 517 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 LHFPL3Q86UP9 236 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 DENND1CQ8IV53 801 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 C10orf111Q8N326 155 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 C12orf45Q8N5I9 185 aaPredicted RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 OR52I1Q8NGK6 324 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ARRDC2Q8TBH0 407 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 GLYATL2Q8WU03 294 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PIH1D2Q8WWB5 315 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 FAM3CQ92520 227 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 NECAB3Q96P71 396 aaPredicted RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 GFM1Q96RP9 751 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 NIPSNAP1Q9BPW8 284 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 TSSK6Q9BXA6 273 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 LATS2Q9NRM7 1088 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SLC6A13Q9NSD5 602 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 EXO1Q9UQ84 846 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 MYO10Q9HD67 2058 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 DBX1A6NMT0 343 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 ZNF729A6NN14 1252 aaPredicted RBP4.9□□□□□ -1.62
USP28-213ENST00000544967 AGAP14A8MT82 685 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 F5H5T6 163 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 PRAMEF2O60811 474 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 IFNGP01579 166 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 TP53P04637 393 aaPredicted RBP4.9□□□□□ -1.62
USP28-213ENST00000544967 HIST1H2ABP04908 130 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 CNR2P34972 360 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 NNMTP40261 264 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 MNDAP41218 407 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 NBL1P41271 181 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 CRYBA2P53672 197 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 WNT3P56703 355 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 ZP1P60852 638 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 AP1S1P61966 158 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 TSPAN5P62079 268 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 FOXO1Q12778 655 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 DOC2BQ14184 412 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 PTPRCAPQ14761 206 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 HLXQ14774 488 aaPredicted RBP4.9□□□□□ -1.62
USP28-213ENST00000544967 ZNF630Q2M218 657 aaPredicted RBP4.9□□□□□ -1.62
USP28-213ENST00000544967 SGO1Q5FBB7 561 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 SLC25A25Q6KCM7 469 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 FAM111BQ6SJ93 734 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 SBSNQ6UWP8 590 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 CASP12Q6UXS9 341 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 MOB3CQ70IA8 216 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 HIST3H2AQ7L7L0 130 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 CHMP1BQ7LBR1 199 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 LRRC70Q7Z2Q7 622 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 VTCN1Q7Z7D3 282 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 SULF2Q8IWU5 870 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 L3MBTL4Q8NA19 623 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 ZNF527Q8NB42 609 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 OR2T35Q8NGX2 323 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 ZDHHC1Q8WTX9 485 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 C15orf40Q8WUR7 153 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 GATAD2BQ8WXI9 593 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 HIST1H2ACQ93077 130 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 ECHDC3Q96DC8 303 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 LRRC46Q96FV0 321 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 LRIG1Q96JA1 1093 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 SLC6A18Q96N87 628 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 HBEGFQ99075 208 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 ZDHHC5Q9C0B5 715 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 EVA1AQ9H8M9 152 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 IPPKQ9H8X2 491 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 GSN-AS1Q9NRJ2 163 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 CLEC4EQ9ULY5 219 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 NPFFR2Q9Y5X5 522 aa4.9□□□□□ -1.62
USP28-213ENST00000544967 A0A1W2PRB8 838 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 LINC00587B1AMM8 73 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 PRAMEF11O60813 436 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 NDUFS3O75489 264 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 ATG12O94817 140 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 SCAF4O95104 1147 aaKnown RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 IGHV2-70P01814 119 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 CSTBP04080 98 aaKnown RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 QDPRP09417 244 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 SAGP10523 405 aaPredicted RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 CXCL3P19876 107 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 POU1F1P28069 291 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 STAT5AP42229 794 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 RNF144AP50876 292 aaPredicted RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 PCBP3P57721 371 aaKnown RBP4.9□□□□□ -1.63
USP28-213ENST00000544967 AP3S2P59780 193 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 CXADRP78310 365 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 E2F1Q01094 437 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 SPIBQ01892 262 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 MESP2Q0VG99 397 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 LMAN2Q12907 356 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 ST3GAL2Q16842 350 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 XKR6Q5GH73 641 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 MARC1Q5VT66 337 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 LIPKQ5VXJ0 399 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 OLFML2AQ68BL7 652 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 RAET1GQ6H3X3 334 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 NCEH1Q6PIU2 408 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 CERS6Q6ZMG9 384 aa4.9□□□□□ -1.63
USP28-213ENST00000544967 LRRC69Q6ZNQ3 347 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms