RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	MT-ND1	P03886	318 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	SEMG1	P04279	462 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	ZNF24	P17028	368 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	RHCE	P18577	417 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	HK1	P19367	917 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	DPP4	P27487	766 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	SRD5A2	P31213	254 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	RFC3	P40938	356 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	HTR3A	P46098	478 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	YAP1	P46937	504 aa	Known RBP	10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	SMIM11A	P58511	58 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	ELF3	P78545	371 aa	Predicted RBP	10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	VLDLR	P98155	873 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	HOXC5	Q00444	222 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	ST3GAL3	Q11203	375 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	QPRT	Q15274	297 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	OR1Q1	Q15612	314 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	INPP5J	Q15735	1006 aa	Predicted RBP	10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	ENTPD8	Q5MY95	495 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	RAET1L	Q5VY80	246 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	WBP2NL	Q6ICG8	309 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	AAGAB	Q6PD74	315 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	COMTD1	Q86VU5	262 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	LACC1	Q8IV20	430 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	RBMXL3	Q8N7X1	1067 aa	Known RBP	10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	FADS6	Q8N9I5	356 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	WDSUB1	Q8N9V3	476 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	TEX19	Q8NA77	164 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	OR14L1P	Q8NHC6	308 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	GPR119	Q8TDV5	335 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	ST8SIA1	Q92185	356 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	PNPLA2	Q96AD5	504 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	ZBTB8A	Q96BR9	441 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	ARSG	Q96EG1	525 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	C1GALT1C1	Q96EU7	318 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	GNRHR2	Q96P88	292 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	ZNF300	Q96RE9	604 aa	Predicted RBP	10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	CHID1	Q9BWS9	393 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	SLC25A18	Q9H1K4	315 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	EXO5	Q9H790	373 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	CTPS2	Q9NRF8	586 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	FBXL2	Q9UKC9	423 aa		10.82	□□□□□ -0.68
DDB1-223	ENST00000543658	CELSR3	Q9NYQ7	3312 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ZFHX4	Q86UP3	3567 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	TRAPPC13	A5PLN9	417 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	PINLYP	A6NC86	204 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	LRRC3C	A6NJW4	275 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ELOA3D	A6NLF2	546 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	TMEM229A	B2RXF0	380 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658		K7EM74	188 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	DEAF1	O75398	565 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	TIPRL	O75663	272 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	OR5F1	O95221	314 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	CRYAB	P02511	175 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	PRG2	P13727	222 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	TCEA1	P23193	301 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	FAS	P25445	335 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	EIF1	P41567	113 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ACAA2	P42765	397 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ZNF136	P52737	540 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	PPIA	P62937	165 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	PLAUR	Q03405	335 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	MERTK	Q12866	999 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	NPTX1	Q15818	432 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	10.81	□□□□□ -0.68	2e-8	■■■■□ 22.5
DDB1-223	ENST00000543658	ELOA3B	Q3SY89	546 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ALG10B	Q5I7T1	473 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	SLC6A19	Q695T7	634 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	RPUSD3	Q6P087	351 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ZNF613	Q6PF04	617 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	FAM180A	Q6UWF9	173 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	PIWIL3	Q7Z3Z3	882 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	GRINA	Q7Z429	371 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	RBM45	Q8IUH3	476 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	FAM109A	Q8N4B1	249 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ZFP62	Q8NB50	900 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ELOA3	Q8NG57	546 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	OR4D11	Q8NGI4	311 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ADAMTS16	Q8TE57	1224 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	DNAJA4	Q8WW22	397 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	DUS3L	Q96G46	650 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	SLC41A3	Q96GZ6	507 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	PIP5K1A	Q99755	562 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	PIGQ	Q9BRB3	760 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	LDAH	Q9H6V9	325 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ZNF703	Q9H7S9	590 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	REEP1	Q9H902	201 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	S100A14	Q9HCY8	104 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	MED17	Q9NVC6	651 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	ARMC1	Q9NVT9	282 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	QPCTL	Q9NXS2	382 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	SPIN1	Q9Y657	262 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	DMXL2	Q8TDJ6	3036 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	KIAA1549	Q9HCM3	1950 aa		10.81	□□□□□ -0.68
DDB1-223	ENST00000543658	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		10.8	□□□□□ -0.68
DDB1-223	ENST00000543658		H0Y3Z8	333 aa		10.8	□□□□□ -0.68
DDB1-223	ENST00000543658		J3KTA2	159 aa		10.8	□□□□□ -0.68
DDB1-223	ENST00000543658	CHP2	O43745	196 aa		10.8	□□□□□ -0.68
DDB1-223	ENST00000543658	E2F6	O75461	281 aa		10.8	□□□□□ -0.68
DDB1-223	ENST00000543658	DIRAS1	O95057	198 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms