RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	C7orf57	Q8NEG2	295 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	OR4M2	Q8NGB6	313 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	OR13C2	Q8NGS9	318 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	SECISBP2	Q96T21	854 aa	Known RBP	13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	ZFYVE21	Q9BQ24	234 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	PRSS27	Q9BQR3	290 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	IL21R	Q9HBE5	538 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	ING3	Q9NXR8	418 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	COMMD3	Q9UBI1	195 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	PLEKHB1	Q9UF11	243 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	CD207	Q9UJ71	328 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	DTX4	Q9Y2E6	619 aa		13.7	□□□□□ -0.22
DDX55-209	ENST00000542286	OR7A10	O76100	309 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	SMIM10L1	P0DMW3	83 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	TBXA2R	P21731	343 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	SLC1A3	P43003	542 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	SLC9A3	P48764	834 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	PPM1F	P49593	454 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	KIAA1024L	P59773	190 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	ZNF620	Q6ZNG0	422 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	RASSF6	Q6ZTQ3	369 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	KLB	Q86Z14	1044 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	AVL9	Q8NBF6	648 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	OR8H1	Q8NGG4	311 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	SPRYD4	Q8WW59	207 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	SMIM10	Q96HG1	83 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	DIRAS2	Q96HU8	199 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	SLC38A2	Q96QD8	506 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	CCDC86	Q9H6F5	360 aa	Known RBP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	HCN3	Q9P1Z3	774 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	CABIN1	Q9Y6J0	2220 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	LRRN3	E7EW58	273 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	ST6GAL1	P15907	406 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	NAGA	P17050	411 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	PRKAR1B	P31321	381 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	EEF1A1	P68104	462 aa	Known RBP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	GXYLT1	Q4G148	440 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	PYDC2	Q56P42	97 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	FAM181A	Q8N9Y4	354 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	RELT	Q969Z4	430 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	SERINC2	Q96SA4	455 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	KATNB1	Q9BVA0	655 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	GTPBP2	Q9BX10	602 aa	Known RBP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	UBQLN3	Q9H347	655 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	LRRN3	Q9H3W5	708 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	RABL2A	Q9UBK7	228 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	EIF3K	Q9UBQ5	218 aa	Known RBP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	SF3B6	Q9Y3B4	125 aa	Known RBP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	SIRT4	Q9Y6E7	314 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX55-209	ENST00000542286	CACNA1C	Q13936	2221 aa		13.69	□□□□□ -0.22
DDX55-209	ENST00000542286		A0A1B0GVC2	190 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286		A6NIN4	97 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286		B4DGG1	531 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	SYT5	O00445	386 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	CPE	P16870	476 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	GSTM3	P21266	225 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	NOS3	P29474	1203 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	LTBR	P36941	435 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	ZNF155	Q12901	538 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	ILF3	Q12906	894 aa	Known RBP eCLIP	13.68	□□□□□ -0.22	6e-7	■□□□□ 8.1
DDX55-209	ENST00000542286	DUSP8	Q13202	625 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	OR1Q1	Q15612	314 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	NDUFA9	Q16795	377 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	PGGHG	Q32M88	737 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	AADACL4	Q5VUY2	407 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	TAF8	Q7Z7C8	310 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	SDR16C5	Q8N3Y7	309 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	NT5C	Q8TCD5	201 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	CNOT9	Q92600	299 aa	Known RBP	13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	RERG	Q96A58	199 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	MARVELD3	Q96A59	401 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	MOAP1	Q96BY2	351 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	OR51V1	Q9H2C8	321 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	OR52D1	Q9H346	318 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	MTHFD2L	Q9H903	347 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	CBLC	Q9ULV8	474 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	ABCA7	Q8IZY2	2146 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	HEATR5A	Q86XA9	2040 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	PCDH15	Q96QU1	1955 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	SEC14L5	O43304	696 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	HCCS	P53701	268 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	ADAM15	Q13444	863 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	FAM53B	Q14153	422 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	KIR2DS3	Q14952	304 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	MINDY4	Q4G0A6	757 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	FAM27D1	Q5T7N8	215 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	MBOAT2	Q6ZWT7	520 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	CSNK1A1L	Q8N752	337 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	DNAJC5G	Q8N7S2	189 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	TMEM99	Q8N816	258 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286	GDPD1	Q8N9F7	314 aa		13.68	□□□□□ -0.22
DDX55-209	ENST00000542286		A0A0A6YYC8	382 aa	Predicted RBP	13.67	□□□□□ -0.22
DDX55-209	ENST00000542286	IQCM	A0A1B0GVH7	501 aa		13.67	□□□□□ -0.22
DDX55-209	ENST00000542286	TGFBR3L	H3BV60	316 aa		13.67	□□□□□ -0.22
DDX55-209	ENST00000542286		I3L1I5	382 aa	Predicted RBP	13.67	□□□□□ -0.22
DDX55-209	ENST00000542286	CYR61	O00622	381 aa		13.67	□□□□□ -0.22
DDX55-209	ENST00000542286	TLX1	P31314	330 aa	Predicted RBP	13.67	□□□□□ -0.22
DDX55-209	ENST00000542286	EMD	P50402	254 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms