RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 ZNF527Q8NB42 609 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 OR4C3Q8NH37 302 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 PNPT1Q8TCS8 783 aaKnown RBP7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 BCAS4Q8TDM0 211 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 RAB8BQ92930 207 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 ROPN1LQ96C74 230 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 LRRC58Q96CX6 371 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 ZNF597Q96LX8 424 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 TRNT1Q96Q11 434 aaKnown RBP7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 RBM24Q9BX46 236 aaKnown RBP7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 SAP130Q9H0E3 1048 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 UBTD1Q9HAC8 227 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 SDHAF3Q9NRP4 125 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 FBXO34Q9NWN3 711 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 QPCTLQ9NXS2 382 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 KLRF1Q9NZS2 232 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 CALML5Q9NZT1 146 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 P2RX2Q9UBL9 471 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 SLC6A5Q9Y345 797 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 WIF1Q9Y5W5 379 aa7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 NUP214P35658 2090 aaPredicted RBP7.87□□□□□ -1.15
CLSTN3-212ENST00000541770 CHD3Q12873 2000 aaKnown RBP7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 MAP1AP78559 2803 aaPredicted RBP7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 IGLV3-32A0A0A0MS00 114 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 TMEM247A6NEH6 219 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 LRRC3CA6NJW4 275 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 RNF212BA8MTL3 300 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 FXYD1O00168 92 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 SCDO00767 359 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 SNPHO15079 494 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 KIAA0513O60268 411 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 FCMRO60667 390 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 GOSR1O95249 250 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 H6PDO95479 791 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 TFPTP0C1Z6 253 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 HPGDP15428 266 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 MASP1P48740 699 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 SORDQ00796 357 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 CRYZQ08257 329 aaKnown RBP7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 GNA13Q14344 377 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 SF3B4Q15427 424 aaKnown RBP eCLIP7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 MAPK11Q15759 364 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 ZNF141Q15928 474 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 SYPL1Q16563 259 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 GRAMD1BQ3KR37 738 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 KLHL26Q53HC5 615 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 FNDC7Q5VTL7 733 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 PRAMEF8Q5VWM4 474 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 PRAMEF7Q5VXH5 474 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 TIGD3Q6B0B8 471 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 APOOLQ6UXV4 268 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 HACD2Q6Y1H2 254 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 FRRS1Q6ZNA5 592 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 LRRC74BQ6ZQY2 392 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 GALNT10Q86SR1 603 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 MISPQ8IVT2 679 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 PM20D2Q8IYS1 436 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 LRRC75A-AS1Q8N1F1 130 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 POU5F2Q8N7G0 328 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 OR8J3Q8NGG0 315 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 PIGTQ969N2 578 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 RCN3Q96D15 328 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 DTNBP1Q96EV8 351 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 DOCK7Q96N67 2140 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 TIMP4Q99727 224 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 CCL19Q99731 98 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 SH3GL1Q99961 368 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 TBL1XR1Q9BZK7 514 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 SLC38A1Q9H2H9 487 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 IKZF5Q9H5V7 419 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 TMEM38AQ9H6F2 299 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 KAT8Q9H7Z6 458 aaKnown RBP7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 EFCAB1Q9HAE3 211 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 GALNT9Q9HCQ5 603 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 ACKR4Q9NPB9 350 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 A4GALTQ9NPC4 353 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 FLRT3Q9NZU0 649 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 C6orf203Q9P0P8 240 aaPredicted RBP7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 WDR45Q9Y484 360 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 EXPH5Q8NEV8 1989 aa7.86□□□□□ -1.15
CLSTN3-212ENST00000541770 FN1P02751 2386 aaKnown RBP7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 DSPPQ9NZW4 1301 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 HEATR5AQ86XA9 2040 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 A0A0G2JPF8 293 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 HNRNPCL2B2RXH8 293 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 HNRNPCL3B7ZW38 293 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 NDUFB5O43674 189 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 HNRNPCL1O60812 293 aaKnown RBP7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 UGT2B17O75795 530 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 CBR3O75828 277 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 ANGPTL1O95841 491 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 CHRM4P08173 479 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 HNRNPCL4P0DMR1 293 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 TMIGD3P0DMS9 266 aaPredicted RBP7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 ARAFP10398 606 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 NR2F1P10589 423 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 BMP7P18075 431 aa7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 RPS4Y1P22090 263 aaKnown RBP7.85□□□□□ -1.15
CLSTN3-212ENST00000541770 CPOXP36551 454 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms