RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 AGKQ53H12 422 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 OR2A2Q6IF42 318 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 ESPNLQ6ZVH7 1005 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 CHMP1BQ7LBR1 199 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 MSRB3Q8IXL7 192 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 TSPEARQ8WU66 669 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 ST8SIA1Q92185 356 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 ZG16BQ96DA0 208 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 THOC1Q96FV9 657 aaKnown RBP11.79□□□□□ -0.52
LTBR-208ENST00000541005 MTHFD2LQ9H903 347 aaPredicted RBP11.79□□□□□ -0.52
LTBR-208ENST00000541005 RNF122Q9H9V4 155 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 FGFR1OP2Q9NVK5 253 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 SLC25A37Q9NYZ2 338 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 CALML5Q9NZT1 146 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 FOXD3Q9UJU5 478 aaPredicted RBP11.79□□□□□ -0.52
LTBR-208ENST00000541005 TEX15Q9BXT5 2789 aa11.79□□□□□ -0.52
LTBR-208ENST00000541005 GJE1A6NN92 205 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 CLIC1O00299 241 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 SYT5O00445 386 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 BCAS1O75363 584 aaPredicted RBP11.78□□□□□ -0.52
LTBR-208ENST00000541005 TNFSF13O75888 250 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 NUDT14O95848 222 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 UBTFL6P0CB48 400 aaPredicted RBP11.78□□□□□ -0.52
LTBR-208ENST00000541005 TROVE2P10155 538 aaKnown RBP eCLIP11.78□□□□□ -0.52
LTBR-208ENST00000541005 PRF1P14222 555 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 NID1P14543 1247 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 IL11P20809 199 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 PPIBP23284 216 aaKnown RBP11.78□□□□□ -0.52
LTBR-208ENST00000541005 ME2P23368 584 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 PEX19P40855 299 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 CRATP43155 626 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 CRISP3P54108 245 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 KCNJ10P78508 379 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 FOXF2Q12947 444 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 SELENBP1Q13228 472 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 QPRTQ15274 297 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 GUSBP1Q15486 140 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 RGNQ15493 299 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 TOMM34Q15785 309 aaPredicted RBP11.78□□□□□ -0.52
LTBR-208ENST00000541005 PAGE3Q5JUK9 113 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 PRAMEF8Q5VWM4 474 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 PRAMEF7Q5VXH5 474 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 CGB2Q6NT52 195 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 PLXDC2Q6UX71 529 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 MEX3BQ6ZN04 569 aaKnown RBP11.78□□□□□ -0.52
LTBR-208ENST00000541005 DMRTC2Q8IXT2 367 aaPredicted RBP11.78□□□□□ -0.52
LTBR-208ENST00000541005 TMCO5AQ8N6Q1 288 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 OR10D3Q8NH80 312 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 FBXO27Q8NI29 283 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 SLC38A5Q8WUX1 472 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 SMPDL3BQ92485 455 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 ZNF524Q96C55 264 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 C14orf79Q96F83 325 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 ZNF845Q96IR2 970 aaPredicted RBP11.78□□□□□ -0.52
LTBR-208ENST00000541005 KLHL15Q96M94 604 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 TMEM120AQ9BXJ8 343 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 PINK1Q9BXM7 581 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 QRSL1Q9H0R6 528 aaKnown RBP11.78□□□□□ -0.52
LTBR-208ENST00000541005 SLC24A3Q9HC58 644 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 A4GALTQ9NPC4 353 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.78□□□□□ -0.52
LTBR-208ENST00000541005 MRGBPQ9NV56 204 aa11.78□□□□□ -0.52
LTBR-208ENST00000541005 A0A1W2PNV4 684 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 FAAHO00519 579 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 EIF1AYO14602 144 aaKnown RBP11.77□□□□□ -0.53
LTBR-208ENST00000541005 EFNA2O43921 213 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 DBIP07108 87 aaKnown RBP11.77□□□□□ -0.53
LTBR-208ENST00000541005 CD1EP15812 388 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 NCF2P19878 526 aaPredicted RBP11.77□□□□□ -0.53
LTBR-208ENST00000541005 PGCP20142 388 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 MDH1P40925 334 aaKnown RBP11.77□□□□□ -0.53
LTBR-208ENST00000541005 SLC6A8P48029 635 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 CCR4P51679 360 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 GUCY1A3Q02108 690 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 GNA13Q14344 377 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 PON3Q15166 354 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 DLEU7Q6UYE1 221 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 GDF7Q7Z4P5 450 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 MCEMP1Q8IX19 187 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 PEX5LQ8IYB4 626 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 ZNF295-AS1Q8N0V1 137 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 LILRA2Q8N149 483 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 DPP10Q8N608 796 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 OR2V1Q8NHB1 315 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 FNDC9Q8TBE3 224 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 WDR60Q8WVS4 1066 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 TMEM234Q8WY98 164 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 FIG4Q92562 907 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 RNASE6Q93091 150 aaKnown RBP11.77□□□□□ -0.53
LTBR-208ENST00000541005 INTS12Q96CB8 462 aaKnown RBP11.77□□□□□ -0.53
LTBR-208ENST00000541005 LRRC46Q96FV0 321 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 THUMPD3Q9BV44 507 aaKnown RBP11.77□□□□□ -0.53
LTBR-208ENST00000541005 PIGMQ9H3S5 423 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 BCL2L10Q9HD36 194 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 ACER3Q9NUN7 267 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 DNAJB12Q9NXW2 375 aaKnown RBP11.77□□□□□ -0.53
LTBR-208ENST00000541005 VAPAQ9P0L0 249 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 SLAMF8Q9P0V8 285 aa11.77□□□□□ -0.53
LTBR-208ENST00000541005 LEF1Q9UJU2 399 aaPredicted RBP11.77□□□□□ -0.53
LTBR-208ENST00000541005 PRDM4Q9UKN5 801 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms