RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 GGT1P19440 569 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 AQP1P29972 269 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 RFC3P40938 356 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 APOBEC1P41238 236 aaKnown RBP15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 KCNJ5P48544 419 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 TDGF1P3P51864 188 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 MLLT10P55197 1068 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 DLX5P56178 289 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 SELENOWP63302 87 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 TLE1Q04724 770 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 SLC25A53Q5H9E4 307 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 RNFT1Q5M7Z0 435 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 GLYATQ6IB77 296 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 VRK2Q86Y07 508 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 GTPBP8Q8N3Z3 284 aaPredicted RBP15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 FIG4Q92562 907 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 FAM162AQ96A26 154 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 MCUR1Q96AQ8 359 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 ZNF559Q9BR84 538 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 TRIM2Q9C040 744 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 DEFB127Q9H1M4 99 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 MED17Q9NVC6 651 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 PAQR5Q9NXK6 330 aaPredicted RBP15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 TESQ9UGI8 421 aaKnown RBP15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 SNX13Q9Y5W8 968 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 AP4B1Q9Y6B7 739 aa15.9■□□□□ 0.14
CLSTN3-210ENST00000540931 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 PRRG2O14669 202 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 CDC40O60508 579 aaKnown RBP eCLIP15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 LGI1O95970 557 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 GP1BBP13224 206 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 GABRA1P14867 456 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 PTGS2P35354 604 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 EPS8Q12929 822 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 TRIM25Q14258 630 aaKnown RBP15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 PDSS1Q5T2R2 415 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 WLSQ5T9L3 541 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 RAET1LQ5VY80 246 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 WBP2NLQ6ICG8 309 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 CBLN3Q6UW01 205 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 RINLQ6ZS11 566 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 GRINAQ7Z429 371 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 SLC25A43Q8WUT9 341 aaPredicted RBP15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 DNAJA4Q8WW22 397 aaPredicted RBP15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 MIB2Q96AX9 1013 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 SFXN2Q96NB2 322 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 RTN4RQ9BZR6 473 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 TRIM15Q9C019 465 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 C12orf10Q9HB07 376 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 ACER3Q9NUN7 267 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 SELENONQ9NZV5 590 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 RPS6KB2Q9UBS0 482 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 NTNG1Q9Y2I2 539 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 NBASA2RRP1 2371 aa15.89■□□□□ 0.13
CLSTN3-210ENST00000540931 ZIC3O60481 467 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 FESP07332 822 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 ABOP16442 354 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 MST1P26927 711 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 SLC1A3P43003 542 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 CLK1P49759 484 aaKnown RBP15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 RGS8P57771 180 aaPredicted RBP15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 TRAP1Q12931 704 aaKnown RBP15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 PLPPR5Q32ZL2 321 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 LRRC23Q53EV4 343 aaPredicted RBP15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 VASNQ6EMK4 673 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 LSMEM1Q8N8F7 131 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 CNOT9Q92600 299 aaKnown RBP15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 ABTB1Q969K4 478 aaPredicted RBP15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 ASB9Q96DX5 294 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 NSMCE2Q96MF7 247 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 TMEM27Q9HBJ8 222 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 ACTR3BQ9P1U1 418 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 ACAD8Q9UKU7 415 aa15.88■□□□□ 0.13
CLSTN3-210ENST00000540931 FIGNL2A6NMB9 653 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 AHRRA9YTQ3 701 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 AP3D1O14617 1153 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 WDR1O75083 606 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 CPN1P15169 458 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 GFRA1P56159 465 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 RPS3AP61247 264 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 RAC1P63000 192 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 DMTNQ08495 405 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 SELENBP1Q13228 472 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 QPRTQ15274 297 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 CYBRD1Q53TN4 286 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 SWT1Q5T5J6 900 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 C5orf46Q6UWT4 87 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 CBLL1Q75N03 491 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 OLIG3Q7RTU3 272 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 YTHDF3Q7Z739 585 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 SPPL2CQ8IUH8 684 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 CLIP4Q8N3C7 705 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 MEIOBQ8N635 442 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 FBXO27Q8NI29 283 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 TAMM41Q96BW9 452 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 SLC7A6OSQ96CW6 309 aaPredicted RBP15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 THTPAQ9BU02 230 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 VDAC3Q9Y277 283 aa15.87■□□□□ 0.13
CLSTN3-210ENST00000540931 CENPVL1A0A0U1RR11 272 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms