RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 GPR65Q8IYL9 337 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 OR2L13Q8N349 312 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 KIR3DL3Q8N743 410 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 OR4D9Q8NGE8 314 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 AKR7LQ8NHP1 331 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 SCFD1Q8WVM8 642 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 TRUB1Q8WWH5 349 aaKnown RBP2.3□□□□□ -2.04
CD44-234ENST00000531873 PSMG2Q969U7 264 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 ZBED6CLQ96FA7 236 aaPredicted RBP2.3□□□□□ -2.04
CD44-234ENST00000531873 PPP1R16AQ96I34 528 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 TCEANC2Q96MN5 208 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 NOL4LQ96MY1 436 aaPredicted RBP2.3□□□□□ -2.04
CD44-234ENST00000531873 SLC38A2Q96QD8 506 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 OR5B2Q96R09 309 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 CYP2S1Q96SQ9 504 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 MCHR1Q99705 422 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 ZNF670Q9BS34 389 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 NIPSNAP3BQ9BS92 247 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 SPATA16Q9BXB7 569 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 PARD6BQ9BYG5 372 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 ROPN1BQ9BZX4 212 aaPredicted RBP2.3□□□□□ -2.04
CD44-234ENST00000531873 TRIM15Q9C019 465 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 SGK2Q9HBY8 427 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 MCCC2Q9HCC0 563 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 PAK1IP1Q9NWT1 392 aaPredicted RBP2.3□□□□□ -2.04
CD44-234ENST00000531873 ZNF581Q9P0T4 197 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 SPRR3Q9UBC9 169 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 CTNNA3Q9UI47 895 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 SAMD4AQ9UPU9 718 aaKnown RBP2.3□□□□□ -2.04
CD44-234ENST00000531873 PDE10AQ9Y233 779 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 PIGLQ9Y2B2 252 aa2.3□□□□□ -2.04
CD44-234ENST00000531873 NSD2O96028 1365 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 VSTM2BA6NLU5 285 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 ZNF716A6NP11 495 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 EFCAB7A8K855 629 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 F5H6K3 240 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 FCN1O00602 326 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 PRKYO43930 277 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 ZNF354AO60765 605 aaPredicted RBP2.29□□□□□ -2.04
CD44-234ENST00000531873 RAMP3O60896 148 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 N4BP1O75113 896 aaKnown RBP2.29□□□□□ -2.04
CD44-234ENST00000531873 SH3BGRLO75368 114 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 GPX5O75715 221 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 NOL4O94818 638 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 ZNF735P0CB33 412 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 ACADSP16219 412 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 IMPDH1P20839 514 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 XCR1P46094 333 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 PRKXP51817 358 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 IST1P53990 364 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 ATP1B3P54709 279 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 RPL23AP62750 156 aaKnown RBP2.29□□□□□ -2.04
CD44-234ENST00000531873 MS4A2Q01362 244 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 KLRC3Q07444 240 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 NCBP1Q09161 790 aaKnown RBP2.29□□□□□ -2.04
CD44-234ENST00000531873 KLRB1Q12918 225 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 CUL2Q13617 745 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 CTSL3PQ5NE16 218 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 CEP85LQ5SZL2 805 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 BEND3Q5T5X7 828 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 LIPNQ5VXI9 398 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 ZNF772Q68DY9 489 aaPredicted RBP2.29□□□□□ -2.04
CD44-234ENST00000531873 TAS2R42Q7RTR8 314 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 TPRA1Q86W33 373 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 HIPK1Q86Z02 1210 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 POM121L12Q8N7R1 296 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 VN1R17PQ8TDU5 208 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 FAF2Q96CS3 445 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 CCDC77Q9BR77 488 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 DPH7Q9BTV6 452 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 CAB39LQ9H9S4 337 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 MIEF1Q9NQG6 463 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 B3GNT2Q9NY97 397 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 PAK5Q9P286 719 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 ZNF639Q9UID6 485 aa2.29□□□□□ -2.04
CD44-234ENST00000531873 ATP10AO60312 1499 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 SNED1Q8TER0 1413 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 PNPLA6Q8IY17 1366 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 IGHV3-35A0A0C4DH35 117 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 A0A1B0GVL5 298 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 FAM240BA0A1B0GVZ2 78 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 A0A1W2PPE3 182 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 A0A1W2PQ72 361 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 BTBD17A6NE02 478 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 A8MX80 341 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 E9PLD3 99 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 H0Y8G0 127 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 RS1O15537 224 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 MED7O43513 233 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 CXCL13O43927 109 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 RHBDL1O75783 438 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 SCGNO76038 276 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 DIRAS1O95057 198 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 GAPDHP04406 335 aaKnown RBP2.28□□□□□ -2.04
CD44-234ENST00000531873 H2AFZP0C0S5 128 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 SLC35E2P0CK97 266 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 RNF224P0DH78 156 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 NCF2P19878 526 aaPredicted RBP2.28□□□□□ -2.04
CD44-234ENST00000531873 SERPINA2P20848 420 aa2.28□□□□□ -2.04
CD44-234ENST00000531873 LEPP41159 167 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms