RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TAS2R16Q9NYV7 291 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 COPS7AQ9UBW8 275 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.02■□□□□ 0.643e-6■□□□□ 9.1
VPS28-209ENST00000528142 VSTM2BA6NLU5 285 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 OR6C76A6NM76 312 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 KPNA4O00629 521 aaPredicted RBP19.02■□□□□ 0.63
VPS28-209ENST00000528142 FGF5P12034 268 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 FUT1P19526 365 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 TBXA2RP21731 343 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 LCN1P31025 176 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 MPLP40238 635 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 ZFP36L1Q07352 338 aaKnown RBP19.02■□□□□ 0.63
VPS28-209ENST00000528142 FAAH2Q6GMR7 532 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 ANKRD37Q7Z713 158 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 BPHLQ86WA6 291 aaPredicted RBP19.02■□□□□ 0.63
VPS28-209ENST00000528142 CADM2Q8N3J6 435 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 OR52D1Q9H346 318 aa19.02■□□□□ 0.63
VPS28-209ENST00000528142 IDSB3KWA1 339 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 SURF4O15260 269 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 NGFRP08138 427 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 NR4A1P22736 598 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 LIPAP38571 399 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 TRA2AQ13595 282 aaKnown RBP eCLIP19.01■□□□□ 0.63
VPS28-209ENST00000528142 HLA-DQA1Q5Y7H0 255 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 DBX2Q6ZNG2 339 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 P2RY8Q86VZ1 359 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 CDK20Q8IZL9 346 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 OR2T33Q8NG76 320 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 ADOQ96SZ5 270 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 COL25A1Q9BXS0 654 aaPredicted RBP19.01■□□□□ 0.63
VPS28-209ENST00000528142 UBQLN3Q9H347 655 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 HHATLQ9HCP6 504 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 GPR52Q9Y2T5 361 aa19.01■□□□□ 0.63
VPS28-209ENST00000528142 KDM4EB2RXH2 506 aaPredicted RBP19■□□□□ 0.63
VPS28-209ENST00000528142 OIP5O43482 229 aa19■□□□□ 0.63
VPS28-209ENST00000528142 TSPAN2O60636 221 aa19■□□□□ 0.63
VPS28-209ENST00000528142 NR0B1P51843 470 aaKnown RBP19■□□□□ 0.63
VPS28-209ENST00000528142 SKP2Q13309 424 aa19■□□□□ 0.63
VPS28-209ENST00000528142 SPCS2Q15005 226 aa19■□□□□ 0.63
VPS28-209ENST00000528142 TIGD6Q17RP2 521 aa19■□□□□ 0.63
VPS28-209ENST00000528142 RNLSQ5VYX0 342 aa19■□□□□ 0.63
VPS28-209ENST00000528142 SLC29A4Q7RTT9 530 aa19■□□□□ 0.63
VPS28-209ENST00000528142 PRR22Q8IZ63 422 aa19■□□□□ 0.63
VPS28-209ENST00000528142 AMER2Q8N7J2 671 aa19■□□□□ 0.63
VPS28-209ENST00000528142 BMPERQ8N8U9 685 aa19■□□□□ 0.63
VPS28-209ENST00000528142 C17orf47Q8NEP4 570 aa19■□□□□ 0.63
VPS28-209ENST00000528142 TMEM80Q96HE8 168 aa19■□□□□ 0.63
VPS28-209ENST00000528142 EXOSC3Q9NQT5 275 aaKnown RBP19■□□□□ 0.63
VPS28-209ENST00000528142 MED17Q9NVC6 651 aa19■□□□□ 0.63
VPS28-209ENST00000528142 MRPS18AQ9NVS2 196 aaKnown RBP19■□□□□ 0.63
VPS28-209ENST00000528142 IL20RAQ9UHF4 553 aa19■□□□□ 0.63
VPS28-209ENST00000528142 SIGLEC7Q9Y286 467 aa19■□□□□ 0.63
VPS28-209ENST00000528142 IGHV3-20A0A0C4DH32 117 aa19■□□□□ 0.63
VPS28-209ENST00000528142 CDC14CA4D256 554 aa19■□□□□ 0.63
VPS28-209ENST00000528142 SCDO00767 359 aa19■□□□□ 0.63
VPS28-209ENST00000528142 PRODHO43272 600 aa19■□□□□ 0.63
VPS28-209ENST00000528142 CNOT3O75175 753 aaKnown RBP19■□□□□ 0.63
VPS28-209ENST00000528142 PTP4A3O75365 173 aa19■□□□□ 0.63
VPS28-209ENST00000528142 REM1O75628 298 aa19■□□□□ 0.63
VPS28-209ENST00000528142 HEXBP07686 556 aa19■□□□□ 0.63
VPS28-209ENST00000528142 HPGDP15428 266 aa19■□□□□ 0.63
VPS28-209ENST00000528142 ZNF182P17025 639 aaPredicted RBP19■□□□□ 0.63
VPS28-209ENST00000528142 GAS1P54826 345 aa19■□□□□ 0.63
VPS28-209ENST00000528142 IL11RAQ14626 422 aa19■□□□□ 0.63
VPS28-209ENST00000528142 DESI1Q6ICB0 168 aa19■□□□□ 0.63
VPS28-209ENST00000528142 LCN10Q6JVE6 187 aa19■□□□□ 0.63
VPS28-209ENST00000528142 CACTIN-AS1Q8N1I8 211 aa19■□□□□ 0.63
VPS28-209ENST00000528142 GATSQ8NAP1 163 aa19■□□□□ 0.63
VPS28-209ENST00000528142 NFAM1Q8NET5 270 aaPredicted RBP19■□□□□ 0.63
VPS28-209ENST00000528142 FANK1Q8TC84 345 aa19■□□□□ 0.63
VPS28-209ENST00000528142 HSPBAP1Q96EW2 488 aa19■□□□□ 0.63
VPS28-209ENST00000528142 MESP1Q9BRJ9 268 aa19■□□□□ 0.63
VPS28-209ENST00000528142 TEX12Q9BXU0 123 aa19■□□□□ 0.63
VPS28-209ENST00000528142 SEMA4CQ9C0C4 833 aa19■□□□□ 0.63
VPS28-209ENST00000528142 ENKD1Q9H0I2 346 aa19■□□□□ 0.63
VPS28-209ENST00000528142 RPS6KB2Q9UBS0 482 aa19■□□□□ 0.63
VPS28-209ENST00000528142 COL5A1P20908 1838 aaPredicted RBP18.99■□□□□ 0.63
VPS28-209ENST00000528142 CACNA1HO95180 2353 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 PRR33A8MZF0 331 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 ICOSLGO75144 302 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 ALOX12BO75342 701 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 CH25HO95992 272 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 HMGN1P05114 100 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 ZNF883P0CG24 379 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 UBL4AP11441 157 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 CD36P16671 472 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 CSTF2P33240 577 aaKnown RBP eCLIP18.99■□□□□ 0.63
VPS28-209ENST00000528142 MLLT10P55197 1068 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 PLA2G2CQ5R387 149 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 AADACL4Q5VUY2 407 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 HSDL2Q6YN16 418 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 ZNF367Q7RTV3 350 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 SLCO6A1Q86UG4 719 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 CYP4Z2PQ8N1L4 340 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 ANKK1Q8NFD2 765 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 OR13C2Q8NGS9 318 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 DNAJA4Q8WW22 397 aaPredicted RBP18.99■□□□□ 0.63
VPS28-209ENST00000528142 CTRCQ99895 268 aa18.99■□□□□ 0.63
VPS28-209ENST00000528142 PPIEQ9UNP9 301 aaKnown RBP18.99■□□□□ 0.63
VPS28-209ENST00000528142 A0A087WUJ7 227 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms