RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CAMK2BQ13554 666 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 RTP5Q14D33 572 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 WBP2NLQ6ICG8 309 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 RNF138Q8WVD3 245 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 TMEM239Q8WW34 195 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 MUS81Q96NY9 551 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 ZNF292O60281 2723 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 BCKDKO14874 412 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 MAN1A2O60476 641 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 GSTM3P21266 225 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 ITPKBP27987 946 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 RPS6KA3P51812 740 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 C17orf67Q0P5P2 114 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 SWT1Q5T5J6 900 aaKnown RBP19.22■□□□□ 0.67
VPS28-208ENST00000527797 H3F3CQ6NXT2 135 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 CD300LDQ6UXZ3 194 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 WDR88Q6ZMY6 472 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 NRMQ8IXM6 262 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 DND1Q8IYX4 353 aaKnown RBP19.22■□□□□ 0.67
VPS28-208ENST00000527797 C8orf59Q8N0T1 100 aaPredicted RBP19.22■□□□□ 0.67
VPS28-208ENST00000527797 OR10G3Q8NGC4 313 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 ZNF563Q8TA94 476 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 DUSP19Q8WTR2 217 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 METTL7AQ9H8H3 244 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 KLRF1Q9NZS2 232 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 ICAM5Q9UMF0 924 aa19.22■□□□□ 0.67
VPS28-208ENST00000527797 DCDC2BA2VCK2 349 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 OR6B1O95007 311 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 OSMP13725 252 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 LIFP15018 202 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 SDHBP21912 280 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 RBM34P42696 430 aaKnown RBP19.21■□□□□ 0.67
VPS28-208ENST00000527797 OMPP47874 163 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 P2RX1P51575 399 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 CHN2P52757 468 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 ESRRGP62508 458 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 RPP38P78345 283 aaKnown RBP19.21■□□□□ 0.67
VPS28-208ENST00000527797 KEAP1Q14145 624 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 JMJD6Q6NYC1 403 aaPredicted RBP19.21■□□□□ 0.67
VPS28-208ENST00000527797 UGT2A3Q6UWM9 527 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 TMEM156Q8N614 296 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 OR5W2Q8NH69 310 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 B4GALNT2Q8NHY0 566 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 SDHAF3Q9NRP4 125 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 WDR70Q9NW82 654 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 GMPPBQ9Y5P6 360 aa19.21■□□□□ 0.67
VPS28-208ENST00000527797 PGCP20142 388 aa19.2■□□□□ 0.66
VPS28-208ENST00000527797 CBFBQ13951 182 aa19.2■□□□□ 0.66
VPS28-208ENST00000527797 DCAF10Q5QP82 559 aa19.2■□□□□ 0.66
VPS28-208ENST00000527797 IL20RBQ6UXL0 311 aa19.2■□□□□ 0.66
VPS28-208ENST00000527797 GATA6Q92908 595 aa19.2■□□□□ 0.66
VPS28-208ENST00000527797 THOC3Q96J01 351 aaKnown RBP19.2■□□□□ 0.66
VPS28-208ENST00000527797 CCNL2Q96S94 520 aaPredicted RBP19.2■□□□□ 0.66
VPS28-208ENST00000527797 PNPLA3Q9NST1 481 aa19.2■□□□□ 0.66
VPS28-208ENST00000527797 REV1Q9UBZ9 1251 aa19.2■□□□□ 0.66
VPS28-208ENST00000527797 NDRG4Q9ULP0 352 aaKnown RBP19.2■□□□□ 0.66
VPS28-208ENST00000527797 MED31Q9Y3C7 131 aa19.2■□□□□ 0.66
VPS28-208ENST00000527797 PCDHGB5Q9Y5G0 923 aa19.2■□□□□ 0.66
VPS28-208ENST00000527797 ADAM10O14672 748 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 GMFGO60234 142 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 PIP5K1CO60331 668 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 NUDT14O95848 222 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 EPHA2P29317 976 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 CRISP1P54107 249 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 GAS1P54826 345 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 TSPAN31Q12999 210 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 ZNF691Q5VV52 312 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 TTC33Q6PID6 262 aaPredicted RBP19.19■□□□□ 0.66
VPS28-208ENST00000527797 LINC00114Q6XXX2 140 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 THAP5Q7Z6K1 395 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 CDK20Q8IZL9 346 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 SIRT6Q8N6T7 355 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 SETD9Q8NE22 299 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 BRIX1Q8TDN6 353 aaKnown RBP19.19■□□□□ 0.66
VPS28-208ENST00000527797 C3orf49Q96BT1 292 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 FAM46AQ96IP4 442 aaKnown RBP19.19■□□□□ 0.66
VPS28-208ENST00000527797 FER1L6-AS2Q96M78 137 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 PITX2Q99697 317 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 APOL4Q9BPW4 351 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 GALNT9Q9HCQ5 603 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 ATP13A2Q9NQ11 1180 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 PTPRBP23467 1997 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 GVINP1Q7Z2Y8 2422 aa19.19■□□□□ 0.66
VPS28-208ENST00000527797 MAGEA13PA6NCF6 341 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 C17orf51A8MQB3 221 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 E9PQ18 207 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 CASP3P42574 277 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 SLC1A3P43003 542 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 GSSP48637 474 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 ALDH6A1Q02252 535 aaKnown RBP19.18■□□□□ 0.66
VPS28-208ENST00000527797 PRKCDQ05655 676 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 COL28A1Q2UY09 1125 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 HRASLS5Q96KN8 279 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 SECISBP2Q96T21 854 aaKnown RBP19.18■□□□□ 0.66
VPS28-208ENST00000527797 GPA33Q99795 319 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 ZNF426Q9BUY5 554 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 HHATLQ9HCP6 504 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 HPF1Q9NWY4 346 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 CNIH4Q9P003 139 aa19.18■□□□□ 0.66
VPS28-208ENST00000527797 CHCHD2Q9Y6H1 151 aaPredicted RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms