RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 EXT1Q16394 746 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 BCL2A1Q16548 175 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 C3AR1Q16581 482 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPP1R3AQ16821 1122 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 DUSP6Q16828 381 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 UPP1Q16831 310 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC5A12Q1EHB4 618 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRGPRG-AS1Q2M3A8 158 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 QRICH1Q2TAL8 776 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GOLGA7BQ2TAP0 167 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 KLHL38Q2WGJ6 581 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF699Q32M78 642 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MS4A18Q3C1V0 323 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ALKBH6Q3KRA9 238 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC36A2Q495M3 483 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRC37A5PQ49AS3 106 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GGTA1PQ4G0N0 100 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PTPN20Q4JDL3 420 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC22A6Q4U2R8 563 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYBRD1Q53TN4 286 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAN3Q58A45 887 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TTMPQ5BVD1 217 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 XKR6Q5GH73 641 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 COQ5Q5HYK3 327 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAGE2BQ5JRK9 111 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM31Q5JXX7 168 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 BEND6Q5SZJ8 279 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CELF3Q5SZQ8 465 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 C1orf220Q5T0J3 134 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 THEM4Q5T1C6 240 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 STPG1Q5TH74 334 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR157Q5UAW9 335 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LCN1P1Q5VSP4 162 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 C9orf135Q5VTT2 229 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM69BQ5VUD6 431 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LYPLAL1Q5VWZ2 237 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LIPNQ5VXI9 398 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLX4IPQ5VYV7 408 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TIGD3Q6B0B8 471 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 DMKNQ6E0U4 476 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF470Q6ECI4 717 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TWF2Q6IBS0 349 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 C22orf42Q6IC83 251 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR52W1Q6IF63 320 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TYW3Q6IPR3 259 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 REEP3Q6NUK4 255 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GTF2H2CQ6P1K8 395 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRMT9Q6P2P2 845 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SCYL2Q6P3W7 929 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM171BQ6P995 826 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ULK3Q6PHR2 472 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TTC33Q6PID6 262 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCDC137Q6PK04 289 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPESP1Q6UW49 350 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 BTNL3Q6UXE8 466 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMIGD1Q6UXZ0 262 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CEACAM20Q6UY09 585 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF562Q6V9R5 426 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM64Q6YI46 380 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CERS6Q6ZMG9 384 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCNI2Q6ZMN8 369 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMPRSS11AQ6ZMR5 421 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF852Q6ZMS4 543 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF841Q6ZN19 808 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRC74BQ6ZQY2 392 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLEKHG7Q6ZR37 379 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 C17orf107Q6ZR85 190 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC16A12Q6ZSM3 486 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC24A5Q71RS6 500 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 Q75L30 129 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC35D2Q76EJ3 337 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 FCRLAQ7L513 359 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC16A14Q7RTX9 510 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 APTXQ7Z2E3 356 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPL21Q7Z2W9 205 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PID1Q7Z2X4 250 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TIPARPQ7Z3E1 657 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 HDDC2Q7Z4H3 204 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCXRQ7Z4W1 244 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ABHD12BQ7Z5M8 362 aaPredicted RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CTU1Q7Z7A3 348 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 DHDDSQ86SQ9 333 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 KCNMB4Q86W47 210 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC26A11Q86WA9 606 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 SERPINA9Q86WD7 417 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM17Q86X19 198 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRC6Q86X45 466 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 STX12Q86Y82 276 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 KMT5CQ86Y97 462 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPSM1Q86YR5 675 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLCZ1Q86YW0 608 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CRLF3Q8IUI8 442 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLD3Q8IV08 490 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERI1Q8IV48 349 aaKnown RBP0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 APRG1Q8IVJ8 170 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 MMD2Q8IY49 270 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR65Q8IYL9 337 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRC34Q8IZ02 419 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF34Q8IZ26 560 aa0.51□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDK20Q8IZL9 346 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms