RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ATF7IP2Q5U623 682 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 WSCD1Q658N2 575 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 TMEM225Q6GV28 225 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 CXCL17Q6UXB2 119 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 MOB3BQ86TA1 216 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 TPRA1Q86W33 373 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 C17orf82Q86X59 251 aaPredicted RBP2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZNF584Q8IVC4 421 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 FBXL16Q8N461 479 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 DHRSXQ8N5I4 330 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 KIR3DL3Q8N743 410 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 ANKFN1Q8N957 763 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR51G2Q8NGK0 314 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 SLC5A11Q8WWX8 675 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 FAM122AQ96E09 287 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 CNOT6LQ96LI5 555 aaKnown RBP2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 MCHR1Q99705 422 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 MAPKAP1Q9BPZ7 522 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 TUBGCP2Q9BSJ2 902 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 EDEM2Q9BV94 578 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 NAT10Q9H0A0 1025 aaKnown RBP2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZNF385DQ9H6B1 395 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 ANGPTL2Q9UKU9 493 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 RPH3ALQ9UNE2 315 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 PLLPQ9Y342 182 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 KDRP35968 1356 aa2.96□□□□□ -1.94
HMGB1P28-201ENST00000507778 EPOPA6NHQ4 379 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 TMEM110-MUSTN1A8MSY1 372 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZNF705EA8MWA4 302 aaPredicted RBP2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 GPR89AB7ZAQ6 455 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 E7ESA3 106 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 HAT1O14929 419 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 RS1O15537 224 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 TBL1XO60907 577 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 N4BP1O75113 896 aaKnown RBP2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 LYPLA1O75608 230 aaPredicted RBP2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 LY6G6DO95868 133 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 IGHV3-23P01764 117 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 HSPB1P04792 205 aaKnown RBP2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR8U8P0C7N1 319 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 GPR89BP0CG08 455 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 IGLL1P15814 213 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 PSMB1P20618 241 aaKnown RBP2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZBTB25P24278 435 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 HOXD10P28358 340 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 RGRP47804 291 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 DIO3P55073 304 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 RPS8P62241 208 aaKnown RBP2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 CUL1Q13616 776 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 AANATQ16613 207 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 CCDC152Q4G0S7 254 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 CFAP221Q4G0U5 840 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 C10orf120Q5SQS8 335 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 C9orf129Q5T035 196 aaKnown RBP2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 ATL3Q6DD88 541 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 TMEM110Q86TL2 294 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 VASH2Q86V25 355 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR5L2Q8NGL0 311 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 TCTEX1D2Q8WW35 142 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 BADQ92934 168 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 B3GALT6Q96L58 329 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 TGM7Q96PF1 710 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZNF184Q99676 751 aaPredicted RBP2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 ZSCAN5AQ9BUG6 496 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 TEX13BQ9BXU2 312 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 CHIAQ9BZP6 476 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 EHD1Q9H4M9 534 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 SMYD3Q9H7B4 428 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 SLC17A5Q9NRA2 495 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 B3GNT2Q9NY97 397 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 ONECUT1Q9UBC0 465 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 B4GALT7Q9UBV7 327 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 WARS2Q9UGM6 360 aaKnown RBP2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 TBK1Q9UHD2 729 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 LCMT1Q9UIC8 334 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 SCML2Q9UQR0 700 aa2.95□□□□□ -1.94
HMGB1P28-201ENST00000507778 C15orf38-AP3S2A0A0A6YYH1 394 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 A0A1B0GWB2 263 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 HCN1O60741 890 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 ECI2O75521 394 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 LYPD3O95274 346 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 GNA14O95837 355 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 SEMG1P04279 462 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 ALOX5P09917 674 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 RNH1P13489 461 aaKnown RBP2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 NTSP30990 170 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 HNMTP50135 292 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 ARFIP1P53367 373 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 RNF212Q495C1 297 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 LRRC23Q53EV4 343 aaPredicted RBP2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 CCDC137Q6PK04 289 aaKnown RBP2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 NRMQ8IXM6 262 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 CLEC4FQ8N1N0 589 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 C11orf42Q8N5U0 333 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 C14orf178Q8N769 122 aaPredicted RBP2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 STEAP2Q8NFT2 490 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR10H4Q8NGA5 316 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR52M1Q8NGK5 317 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR4D5Q8NGN0 318 aa2.94□□□□□ -1.94
HMGB1P28-201ENST00000507778 OR1F12Q8NHA8 337 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms