RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 SHC1P29353 583 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 CASP9P55211 416 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 BST1Q10588 318 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 QPRTQ15274 297 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 ACKR1Q16570 336 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 ZNF239Q16600 458 aaKnown RBP11.38□□□□□ -0.59
PTPRF-214ENST00000496043 NDUFAF6Q330K2 333 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 AP1ARQ63HQ0 302 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 HEPHL1Q6MZM0 1159 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 STAC2Q6ZMT1 411 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 EIF3MQ7L2H7 374 aaKnown RBP11.38□□□□□ -0.59
PTPRF-214ENST00000496043 SPATA19Q7Z5L4 167 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 ANKRD46Q86W74 232 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 SLC43A2Q8N370 569 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 TMCO5AQ8N6Q1 288 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 TMEM234Q8WY98 164 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 PIGTQ969N2 578 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 HDHD5Q9BXW7 423 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 GP6Q9HCN6 339 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 POLE3Q9NRF9 147 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 SERINC1Q9NRX5 453 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 THAP1Q9NVV9 213 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 KCNE5Q9UJ90 142 aa11.38□□□□□ -0.59
PTPRF-214ENST00000496043 ESPNB1AK53 854 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 ETV2O00321 342 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-214ENST00000496043 SIAH2O43255 324 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 ARHGEF9O43307 516 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 UGT2B17O75795 530 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 NTN1O95631 604 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 YES1P07947 543 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 PGCP20142 388 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 AGTR1P30556 359 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 SLC7A1P30825 629 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 HOXC12P31275 282 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 CCKARP32238 428 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 CHI3L1P36222 383 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-214ENST00000496043 CCR4P51679 360 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 RAC3P60763 192 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 NKX6-1P78426 367 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-214ENST00000496043 FOXD4Q12950 439 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-214ENST00000496043 SELENBP1Q13228 472 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 SPANXN4Q5MJ08 99 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 SHEQ5VZ18 495 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 SAXO2Q658L1 398 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 ATG16L1Q676U5 607 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 OGFOD2Q6N063 350 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 TNFAIP8L2Q6P589 184 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-214ENST00000496043 C22orf34Q6ZV56 151 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 FCRLAQ7L513 359 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 TUSC5Q8IXB3 177 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 RNF128Q8TEB7 428 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 ZFP90Q8TF47 636 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 OIT3Q8WWZ8 545 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 RAB8BQ92930 207 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 NEURL3Q96EH8 262 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 MARK4Q96L34 752 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 PIP5K1AQ99755 562 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 TACO1Q9BSH4 297 aaKnown RBP11.37□□□□□ -0.59
PTPRF-214ENST00000496043 SRXN1Q9BYN0 137 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 ZNF350Q9GZX5 532 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 SAP130Q9H0E3 1048 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 OR10A4Q9H209 315 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 C12orf49Q9H741 205 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 BTNL2Q9UIR0 455 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 WDR45Q9Y484 360 aa11.37□□□□□ -0.59
PTPRF-214ENST00000496043 TMEM120BA0PK00 339 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 TRPC5OSA6NMA1 111 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 E9PBE3 544 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 SLCO1B7G3V0H7 640 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 KLF4O43474 513 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 DNAJA2O60884 412 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 THBDP07204 575 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 NID1P14543 1247 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 PSMB1P20618 241 aaKnown RBP11.36□□□□□ -0.59
PTPRF-214ENST00000496043 KHKP50053 298 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 NME5P56597 212 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 WDR4P57081 412 aaKnown RBP11.36□□□□□ -0.59
PTPRF-214ENST00000496043 SESN3P58005 492 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 UFM1P61960 85 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 LRRC74AQ0VAA2 488 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 SKP2Q13309 424 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 FAM174BQ3ZCQ3 159 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 TIGD2Q4W5G0 525 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 BEX5Q5H9J7 111 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 OLIG3Q7RTU3 272 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 NUFIP2Q7Z417 695 aaKnown RBP11.36□□□□□ -0.59
PTPRF-214ENST00000496043 CXorf67Q86X51 503 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-214ENST00000496043 P3H2Q8IVL5 708 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 TRIML2Q8N7C3 387 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 STEAP2Q8NFT2 490 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 ABHD3Q8WU67 409 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 ST8SIA1Q92185 356 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 ZNF524Q96C55 264 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 ROPN1LQ96C74 230 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 CCDC115Q96NT0 180 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 ZBTB18Q99592 522 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 SLC35A5Q9BS91 424 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 ACTR6Q9GZN1 396 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 UBTD1Q9HAC8 227 aa11.36□□□□□ -0.59
PTPRF-214ENST00000496043 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms