RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PRSS45Q7RTY3 260 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 OR8H3Q8N146 312 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 OR13H1Q8NG92 308 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 ACOT11Q8WXI4 607 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 ARHGAP9Q9BRR9 750 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 A0A1W2PRG6 482 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 CIB4A0PJX0 185 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 HTR2AP28223 471 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 MAGEB1P43366 347 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 RPS5P46782 204 aaKnown RBP15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 GCGRP47871 477 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 GZMKP49863 264 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 E2F1Q01094 437 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 SLC25A35Q3KQZ1 300 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 LAMTOR1Q6IAA8 161 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 HEPHL1Q6MZM0 1159 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 MZT2BQ6NZ67 158 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 TMEM91Q6ZNR0 172 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 DGAT2L6Q6ZPD8 337 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 Q6ZSR6 202 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 GPR135Q8IZ08 494 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 SLC38A6Q8IZM9 456 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 ARL14Q8N4G2 192 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 AP3S1Q92572 193 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 RASD1Q9Y272 281 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 SLCO1B1Q9Y6L6 691 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 PIAS3Q9Y6X2 628 aa15.32■□□□□ 0.04
CCDC88B-210ENST00000494566 VPS13AQ96RL7 3174 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 TCRBV21S2A2A0A5A6 115 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 GXYLT2A0PJZ3 443 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 SGK494L7N484 410 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 SURF4O15260 269 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 PRKAR1BP31321 381 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 GABRA5P31644 462 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 EVX1P49640 407 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 ZNF136P52737 540 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 GPR176Q14439 515 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 MRPL2Q5T653 305 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 PEX5LQ8IYB4 626 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 OR51A7Q8NH64 312 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 FAM131CQ96AQ9 280 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 ENAMQ9NRM1 1142 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 TNFRSF10DQ9UBN6 386 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 A0A0A6YYJ9 748 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 A6NCN8 305 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 CENPBD1B2RD01 187 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 J3QLW9 94 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 KCNJ13O60928 360 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 CDC123O75794 336 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 ZNF19P17023 458 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 CXCL3P19876 107 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 HNRNPA2B1P22626 353 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 VSX2P58304 361 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 POU4F3Q15319 338 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 MINDY4Q4G0A6 757 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 C3orf38Q5JPI3 329 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 VASNQ6EMK4 673 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 OR2L13Q8N349 312 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 GRHL3Q8TE85 626 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 TM4SF19Q96DZ7 209 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 DNAJA3Q96EY1 480 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 MAP6Q96JE9 813 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 SERINC2Q96SA4 455 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 COQ7Q99807 217 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 ING3Q9NXR8 418 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 CALML5Q9NZT1 146 aa15.31■□□□□ 0.04
CCDC88B-210ENST00000494566 MAKP20794 623 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 IFNGR2P38484 337 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 MLLT3P42568 568 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 TSFMP43897 325 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 P2RX3P56373 397 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 KIAA1024LP59773 190 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 PPP3R1P63098 170 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 BNC1Q01954 994 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 RAB40BQ12829 278 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 HYAL4Q2M3T9 481 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 ZNF620Q6ZNG0 422 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 SLC22A18ASQ8N1D0 253 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 LINC00471Q8N535 108 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 RFLNBQ8N5W9 214 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 TMEM43Q9BTV4 400 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 MCOLN1Q9GZU1 580 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 SLA2Q9H6Q3 261 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 MTHFD2LQ9H903 347 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 HRASLS2Q9NWW9 162 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 USP36Q9P275 1121 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 SLC22A7Q9Y694 548 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 ZGLP1P0C6A0 271 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 IFNA8P32881 189 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 TPBGQ13641 420 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 PGGHGQ32M88 737 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 DCST2Q5T1A1 773 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 COX18Q8N8Q8 333 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 POGLUT1Q8NBL1 392 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 OR4D9Q8NGE8 314 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 NT5CQ8TCD5 201 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 ZFAND1Q8TCF1 268 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 MRPL38Q96DV4 380 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 ZFYVE21Q9BQ24 234 aa15.3■□□□□ 0.04
CCDC88B-210ENST00000494566 CHIAQ9BZP6 476 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms