RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 NTN1O95631 604 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 CHRM4P08173 479 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 GUSBP08236 651 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 ELK4P28324 431 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 MVDP53602 400 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 HPCAP84074 193 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 PLAURQ03405 335 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 CBFBQ13951 182 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 HBMQ6B0K9 141 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 ESPNLQ6ZVH7 1005 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 LINC01560Q8TB33 94 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 AURKBQ96GD4 344 aaPredicted RBP22.13■■□□□ 1.13
UPF3A-209ENST00000492270 KLHL15Q96M94 604 aa22.13■■□□□ 1.13
UPF3A-209ENST00000492270 OPN3Q9H1Y3 402 aaPredicted RBP22.13■■□□□ 1.13
UPF3A-209ENST00000492270 FAM234BA2RU67 622 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 CLDN24A6NM45 220 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 A8MXE2 369 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 ADH6P28332 368 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 CPOXP36551 454 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 PGM1P36871 562 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 PEX19P40855 299 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 GUSBP1Q15486 140 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 AP1ARQ63HQ0 302 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 SLC2A7Q6PXP3 512 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 MSANTD1Q6ZTZ1 278 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 EIF3MQ7L2H7 374 aaKnown RBP22.12■■□□□ 1.13
UPF3A-209ENST00000492270 KIF18BQ86Y91 864 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 FAM71CQ8NEG0 241 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 ATP6V1C2Q8NEY4 427 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 THOC1Q96FV9 657 aaKnown RBP22.12■■□□□ 1.13
UPF3A-209ENST00000492270 PRRG4Q9BZD6 226 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 SLC38A1Q9H2H9 487 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 RMND5AQ9H871 391 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 CLEC4AQ9UMR7 237 aa22.12■■□□□ 1.13
UPF3A-209ENST00000492270 ANP32DO95626 131 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 KRT75O95678 551 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 FCGR2AP12318 317 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 MRPL19P49406 292 aaKnown RBP22.11■■□□□ 1.13
UPF3A-209ENST00000492270 STX1BP61266 288 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 EEF1A1P68104 462 aaKnown RBP22.11■■□□□ 1.13
UPF3A-209ENST00000492270 SORDQ00796 357 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 MAPK11Q15759 364 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 SLC25A53Q5H9E4 307 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 C6orf10Q5SRN2 563 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 EEF1A1P5Q5VTE0 462 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 LSRQ86X29 649 aaPredicted RBP22.11■■□□□ 1.13
UPF3A-209ENST00000492270 LURAP1LQ8IV03 231 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 FUNDC1Q8IVP5 155 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 ITCHQ96J02 903 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 MRGPRX4Q96LA9 322 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 MAGEB18Q96M61 343 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 TRNT1Q96Q11 434 aaKnown RBP22.11■■□□□ 1.13
UPF3A-209ENST00000492270 CCDC28BQ9BUN5 200 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 MCTS1Q9ULC4 181 aaKnown RBP22.11■■□□□ 1.13
UPF3A-209ENST00000492270 LIPT1Q9Y234 373 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 AKAP9Q99996 3911 aa22.11■■□□□ 1.13
UPF3A-209ENST00000492270 TUBAL3A6NHL2 446 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 ETV2O00321 342 aaPredicted RBP22.1■■□□□ 1.13
UPF3A-209ENST00000492270 MSTNO14793 375 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 DNAJA2O60884 412 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 SYNGR4O95473 234 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 CGAP01215 116 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 ZCCHC18P0CG32 403 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 ETFAP13804 333 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 ANXA11P50995 505 aaKnown RBP22.1■■□□□ 1.13
UPF3A-209ENST00000492270 TMEM176BQ3YBM2 270 aaPredicted RBP22.1■■□□□ 1.13
UPF3A-209ENST00000492270 FAM222BQ8WU58 562 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 NRGNQ92686 78 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 GTF2H4Q92759 462 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 OSTF1Q92882 214 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 GPATCH1Q9BRR8 931 aaKnown RBP22.1■■□□□ 1.13
UPF3A-209ENST00000492270 SRXN1Q9BYN0 137 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 COQ10BQ9H8M1 238 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 TPT1P8Q9HAU6 139 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 PAQR5Q9NXK6 330 aaPredicted RBP22.1■■□□□ 1.13
UPF3A-209ENST00000492270 SLC35A3Q9Y2D2 325 aa22.1■■□□□ 1.13
UPF3A-209ENST00000492270 CTAG2O75638 210 aa22.09■■□□□ 1.13
UPF3A-209ENST00000492270 NR2F1P10589 423 aa22.09■■□□□ 1.13
UPF3A-209ENST00000492270 CD1EP15812 388 aa22.09■■□□□ 1.13
UPF3A-209ENST00000492270 CAPN3P20807 821 aa22.09■■□□□ 1.13
UPF3A-209ENST00000492270 TXNL4AP83876 142 aaKnown RBP22.09■■□□□ 1.13
UPF3A-209ENST00000492270 ZNF474Q6S9Z5 364 aaPredicted RBP22.09■■□□□ 1.13
UPF3A-209ENST00000492270 LRRC74BQ6ZQY2 392 aa22.09■■□□□ 1.13
UPF3A-209ENST00000492270 FAM214BQ7L5A3 538 aa22.09■■□□□ 1.13
UPF3A-209ENST00000492270 OIT3Q8WWZ8 545 aa22.09■■□□□ 1.13
UPF3A-209ENST00000492270 ROBO4Q8WZ75 1007 aa22.09■■□□□ 1.13
UPF3A-209ENST00000492270 PAIP1Q9H074 479 aaKnown RBP22.09■■□□□ 1.13
UPF3A-209ENST00000492270 ADAM11O75078 769 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 NID1P14543 1247 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 HOXB9P17482 250 aaPredicted RBP22.08■■□□□ 1.13
UPF3A-209ENST00000492270 RYKP34925 604 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 CRATP43155 626 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 CARD18P57730 90 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 SESN3P58005 492 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 KCNJ10P78508 379 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 SELENBP1Q13228 472 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 ZNF239Q16600 458 aaKnown RBP22.08■■□□□ 1.13
UPF3A-209ENST00000492270 PDSS1Q5T2R2 415 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 CDH24Q86UP0 819 aa22.08■■□□□ 1.13
UPF3A-209ENST00000492270 ST8SIA1Q92185 356 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms