RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 OR52P1PQ8NH57 321 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 FBXO27Q8NI29 283 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CA5BP1Q8WTZ4 195 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CNOT9Q92600 299 aaKnown RBP14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MRGPRX4Q96LA9 322 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CCDC106Q9BWC9 280 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 DNAJB12Q9NXW2 375 aaKnown RBP14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CLCF1Q9UBD9 225 aa14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ZNF443Q9Y2A4 671 aaPredicted RBP14.68□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 A0A0G2JNJ9 132 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MBD3L4A6NDZ8 208 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MBD3L3A6NE82 208 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MBD3L5A6NJ08 208 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 HSPB2A8KAH6 182 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 H0YC42 278 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ETV2O00321 342 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PGM3O95394 542 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 NTN1O95631 604 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 NPPAP01160 153 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 THBS1P07996 1170 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ME2P23368 584 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SUCLG1P53597 346 aaKnown RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TPD52P55327 224 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CLDN15P56746 228 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 RPS3AP61247 264 aaKnown RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 RAC1P63000 192 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SCARB2Q14108 478 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 LARS2Q15031 903 aaKnown RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CDSNQ15517 529 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 HSPB2Q16082 182 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CYP51A1Q16850 503 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SLC25A53Q5H9E4 307 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 RNF220Q5VTB9 566 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 REEP3Q6NUK4 255 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ZNF836Q6ZNA1 936 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MTDHQ86UE4 582 aaKnown RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 GGNQ86UU5 652 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 POU5F2Q8N7G0 328 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PCYOX1LQ8NBM8 494 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TNIP2Q8NFZ5 429 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MBD3L2Q8NHZ7 208 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 RP9Q8TA86 221 aaKnown RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TMEM234Q8WY98 164 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ST8SIA1Q92185 356 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ZNF524Q96C55 264 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 LRRC58Q96CX6 371 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 UCN2Q96RP3 112 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SLC39A3Q9BRY0 314 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 GID8Q9NWU2 228 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 Q9UFV3 132 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ZNF232Q9UNY5 417 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 IFT52Q9Y366 437 aa14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 KLF2Q9Y5W3 355 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ARHGAP21Q5T5U3 1957 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CDHR4A6H8M9 788 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 FXYD1O00168 92 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 EIF1AYO14602 144 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TOXO94900 526 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 IL2RAP01589 272 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PABPC4LP0CB38 370 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 GP1BBP13224 206 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ETS2P15036 469 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 IL11P20809 199 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SLC6A2P23975 617 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 CEACAM8P31997 349 aaPredicted RBP14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 RYKP34925 604 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 EEF1A1P68104 462 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SELENBP1Q13228 472 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ADRM1Q16186 407 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ZSWIM7Q19AV6 140 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 GRAMD2AQ8IUY3 354 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ZNF440Q8IYI8 595 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 C9orf106Q8NAJ2 232 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 C11orf65Q8NCR3 313 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 HIPK4Q8NE63 616 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 OR8J3Q8NGG0 315 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ZNF563Q8TA94 476 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 WNT2BQ93097 391 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SH3GL1Q99961 368 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SPATA9Q9BWV2 254 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MYLK2Q9H1R3 596 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ARMC7Q9H6L4 198 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 TMEM185BQ9H7F4 350 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 KAT8Q9H7Z6 458 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ACER3Q9NUN7 267 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 FAM53CQ9NYF3 392 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ANGPT4Q9Y264 503 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 DIDO1Q9BTC0 2240 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 DOPEY2Q9Y3R5 2298 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 MED12Q93074 2177 aa14.66□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PRSS44E7EML9 344 aa14.65□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ADAM11O75078 769 aa14.65□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 OPN1LWP04000 364 aa14.65□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 COX4I1P13073 169 aa14.65□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 HTR1EP28566 365 aa14.65□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 SESN3P58005 492 aa14.65□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 RBBP4Q09028 425 aa14.65□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 ZNF311Q5JNZ3 666 aa14.65□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 NANOGP8Q6NSW7 305 aa14.65□□□□□ -0.06
MSH5-SAPCD1-206ENST00000491552 PLXDC2Q6UX71 529 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms