RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 PRKCAP17252 672 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 TCEA1P23193 301 aaKnown RBP13.23□□□□□ -0.29
LIMS3-205ENST00000487150 PCGF2P35227 344 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 TIMP3P35625 211 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 MAP2K6P52564 334 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 CLDN18P56856 261 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 COPZ1P61923 177 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 FOXF1Q12946 379 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 ART3Q13508 389 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 CAPRIN1Q14444 709 aaKnown RBP13.23□□□□□ -0.29
LIMS3-205ENST00000487150 QPRTQ15274 297 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 HSPB2Q16082 182 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 HACD2Q6Y1H2 254 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 C3P1Q6ZMU1 363 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 ESPNLQ6ZVH7 1005 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 MRGPRGQ86SM5 289 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 NFKBIDQ8NI38 313 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 GPR119Q8TDV5 335 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 RASSF5Q8WWW0 418 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 MAL2Q969L2 176 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 RCN3Q96D15 328 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 UCN2Q96RP3 112 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 HOPXQ9BPY8 73 aaPredicted RBP13.23□□□□□ -0.29
LIMS3-205ENST00000487150 CCDC106Q9BWC9 280 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 QRSL1Q9H0R6 528 aaKnown RBP13.23□□□□□ -0.29
LIMS3-205ENST00000487150 MYLK2Q9H1R3 596 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 TIGARQ9NQ88 270 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 KLHL28Q9NXS3 571 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 DNAJB12Q9NXW2 375 aaKnown RBP13.23□□□□□ -0.29
LIMS3-205ENST00000487150 ZNF175Q9Y473 711 aa13.23□□□□□ -0.29
LIMS3-205ENST00000487150 FXYD1O00168 92 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 IFNA14P01570 189 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 IL2RAP01589 272 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 NUDT7P0C024 238 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 GP1BBP13224 206 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 MNAT1P51948 309 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 DLX5P56178 289 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 SRYQ05066 204 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 SRSF1Q07955 248 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIMS3-205ENST00000487150 PMPCAQ10713 525 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 MAPK11Q15759 364 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 ZNF311Q5JNZ3 666 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 RPS26P11Q5JNZ5 115 aaPredicted RBP13.22□□□□□ -0.29
LIMS3-205ENST00000487150 DCST1Q5T197 706 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 OR2A2Q6IF42 318 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 NANOGP8Q6NSW7 305 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 GRINAQ7Z429 371 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 PATL1Q86TB9 770 aaKnown RBP13.22□□□□□ -0.29
LIMS3-205ENST00000487150 OR10Q1Q8NGQ4 319 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 CA5BP1Q8WTZ4 195 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 ITLN2Q8WWU7 325 aaPredicted RBP13.22□□□□□ -0.29
LIMS3-205ENST00000487150 SMPDL3BQ92485 455 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 WNT2BQ93097 391 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 REXO5Q96IC2 774 aaKnown RBP13.22□□□□□ -0.29
LIMS3-205ENST00000487150 TRIB1Q96RU8 372 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 CCT8L2Q96SF2 557 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 IKZF5Q9H5V7 419 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 NANOGQ9H9S0 305 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 ACER3Q9NUN7 267 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 NDE1Q9NXR1 346 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 ZNF337Q9Y3M9 751 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 FAM215AQ9Y5M1 114 aa13.22□□□□□ -0.29
LIMS3-205ENST00000487150 KLF2Q9Y5W3 355 aaPredicted RBP13.22□□□□□ -0.29
LIMS3-205ENST00000487150 MBD3L4A6NDZ8 208 aaPredicted RBP13.21□□□□□ -0.29
LIMS3-205ENST00000487150 MBD3L3A6NE82 208 aaPredicted RBP13.21□□□□□ -0.29
LIMS3-205ENST00000487150 MBD3L5A6NJ08 208 aaPredicted RBP13.21□□□□□ -0.29
LIMS3-205ENST00000487150 SEC14L5O43304 696 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 GLI4P10075 376 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 PSMA4P25789 261 aaKnown RBP13.21□□□□□ -0.29
LIMS3-205ENST00000487150 SLC7A1P30825 629 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 APOBEC1P41238 236 aaKnown RBP13.21□□□□□ -0.29
LIMS3-205ENST00000487150 NUDT2P50583 147 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 NCALDP61601 193 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 ADORA2A-AS1P86434 159 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 NDUFAF6Q330K2 333 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 FAM91A1Q658Y4 838 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 DHRS4L2Q6PKH6 230 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 OLIG3Q7RTU3 272 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 P4HA3Q7Z4N8 544 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 ARMC8Q8IUR7 673 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 UBQLNLQ8IYU4 475 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 POU5F2Q8N7G0 328 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 CCDC197Q8NCU1 140 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 OR10A6Q8NH74 314 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 MBD3L2Q8NHZ7 208 aaPredicted RBP13.21□□□□□ -0.29
LIMS3-205ENST00000487150 FBXO27Q8NI29 283 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 SDCCAG3Q96C92 435 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 ZG16BQ96DA0 208 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 LRRC46Q96FV0 321 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 KLHL15Q96M94 604 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 TUBA1CQ9BQE3 449 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 ADAM21Q9UKJ8 722 aa13.21□□□□□ -0.29
LIMS3-205ENST00000487150 MCTS1Q9ULC4 181 aaKnown RBP13.21□□□□□ -0.29
LIMS3-205ENST00000487150 SLC22A20A6NK97 555 aa13.2□□□□□ -0.3
LIMS3-205ENST00000487150 CLCA1A8K7I4 914 aa13.2□□□□□ -0.3
LIMS3-205ENST00000487150 FAM220BPB1ANY3 271 aa13.2□□□□□ -0.3
LIMS3-205ENST00000487150 DVL2O14641 736 aa13.2□□□□□ -0.3
LIMS3-205ENST00000487150 AIM2O14862 343 aa13.2□□□□□ -0.3
LIMS3-205ENST00000487150 ADAMDEC1O15204 470 aa13.2□□□□□ -0.3
LIMS3-205ENST00000487150 ZNHIT1O43257 154 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms