RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LAMA4Q16363 1823 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 A6NCN8 305 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 SEC14L2O76054 403 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 ARSBP15848 533 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 SEMA3BQ13214 749 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 POU4F3Q15319 338 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 NRARPQ7Z6K4 114 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 LPAR4Q99677 370 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 SULT4A1Q9BR01 284 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 LMF2Q9BU23 707 aaKnown RBP15.41■□□□□ 0.06
COL7A1-210ENST00000487017 BTBD2Q9BX70 525 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 KCNK5O95279 499 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 MPIG6BO95866 241 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 SCG5P05408 212 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 CEBPBP17676 345 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 STRADBQ9C0K7 418 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 NAALAD2Q9Y3Q0 740 aa15.41■□□□□ 0.06
COL7A1-210ENST00000487017 SLC16A6O15403 523 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 KNG1P01042 644 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 PTHP01270 115 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 PTPRRQ15256 657 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 IRF4Q15306 451 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 CCNJQ5T5M9 372 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 AGAP7PQ5VUJ5 663 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 ENTHD1Q8IYW4 607 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 DNAJC5GQ8N7S2 189 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 PFDN5Q99471 154 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 SSX3Q99909 188 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 MAOAP21397 527 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 CTHP32929 405 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 SRYQ05066 204 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 PRAMEF8Q5VWM4 474 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 PRAMEF7Q5VXH5 474 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 ZNF322Q6U7Q0 402 aaPredicted RBP15.4■□□□□ 0.06
COL7A1-210ENST00000487017 SBSNQ6UWP8 590 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 C3P1Q6ZMU1 363 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 SLC46A3Q7Z3Q1 461 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 CCDC71LQ8N9Z2 235 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 RADILQ96JH8 1075 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 OR5B12Q96R08 314 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 NPAP1Q9NZP6 1156 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 ZNF175Q9Y473 711 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 A0A0A6YYC8 382 aaPredicted RBP15.4■□□□□ 0.06
COL7A1-210ENST00000487017 HMX2A2RU54 273 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 I3L1I5 382 aaPredicted RBP15.4■□□□□ 0.06
COL7A1-210ENST00000487017 NCR1O76036 304 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 ACPPP15309 386 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 HLA-FP30511 346 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 MEF2DQ14814 521 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 EXOSC7Q15024 291 aaKnown RBP15.4■□□□□ 0.06
COL7A1-210ENST00000487017 KHSRPQ92945 711 aaKnown RBP eCLIP15.4■□□□□ 0.06
COL7A1-210ENST00000487017 MED17Q9NVC6 651 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 PKD1L3Q7Z443 1732 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 H3BUI4 141 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 MAN2B1O00754 1011 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 LILRB3O75022 631 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 TSPAN15O95858 294 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 C3orf38Q5JPI3 329 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 PRRT1Q99946 306 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 TIMM29Q9BSF4 260 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 ZNF436Q9C0F3 470 aaPredicted RBP15.4■□□□□ 0.06
COL7A1-210ENST00000487017 CXCL16Q9H2A7 254 aa15.4■□□□□ 0.06
COL7A1-210ENST00000487017 CXXC1Q9P0U4 656 aaPredicted RBP15.4■□□□□ 0.06
COL7A1-210ENST00000487017 MEIS3P1A6NDR6 274 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 HTR3BO95264 441 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 CPMP14384 443 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 PLK5Q496M5 336 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 UBE2NLQ5JXB2 153 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 PRR22Q8IZ63 422 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 SLC38A5Q8WUX1 472 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 VRK1Q99986 396 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-210ENST00000487017 RANGRFQ9HD47 186 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-210ENST00000487017 TESQ9UGI8 421 aaKnown RBP15.39■□□□□ 0.05
COL7A1-210ENST00000487017 ANKRD28O15084 1053 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 OR2T1O43869 369 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 IMPA1P29218 277 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 LUMP51884 338 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-210ENST00000487017 PDE7AQ13946 482 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 ZNF334Q9HCZ1 680 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-210ENST00000487017 HHLA1C9JL84 531 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 GABARAPO95166 117 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 JUNBP17275 347 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-210ENST00000487017 PRKACAP17612 351 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 CAV3P56539 151 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 FAM71F1Q96KD3 344 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-210ENST00000487017 STARD5Q9NSY2 213 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 TMPRSS11EQ9UL52 423 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 LSM5Q9Y4Y9 91 aaKnown RBP15.39■□□□□ 0.05
COL7A1-210ENST00000487017 RAB4BP61018 213 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 FOXK1P85037 733 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 STEAP3Q658P3 488 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 LAX1Q8IWV1 398 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 FAM83FQ8NEG4 500 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-210ENST00000487017 OR5K2Q8NHB8 316 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 GLYATL2Q8WU03 294 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 INIPQ9NRY2 104 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 FTSJ1Q9UET6 329 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 B3GALT1Q9Y5Z6 326 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 GGT3PA6NGU5 568 aa15.39■□□□□ 0.05
COL7A1-210ENST00000487017 AQP9O43315 295 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms