RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TMA16Q96EY4 203 aaKnown RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 CNDP1Q96KN2 507 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 RDH12Q96NR8 316 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 ALKBH3Q96Q83 286 aaPredicted RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 ACCSQ96QU6 501 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 PANX3Q96QZ0 392 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 TAAR6Q96RI8 345 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 RASL10BQ96S79 203 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 DOK1Q99704 481 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 CTRCQ99895 268 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 ANKRD60Q9BZ19 345 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 FAM124BQ9H5Z6 455 aaPredicted RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 SYNDIG1Q9H7V2 258 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 POLD4Q9HCU8 107 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 STMN3Q9NZ72 180 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 ANAPC7Q9UJX3 599 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 PLA2G4CQ9UP65 541 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 POMPQ9Y244 141 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 PRELID1Q9Y255 219 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 PLLPQ9Y342 182 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 UGT2A1Q9Y4X1 527 aa4.68□□□□□ -1.66
USP40-213ENST00000483216 MN1Q10571 1320 aaPredicted RBP4.68□□□□□ -1.66
USP40-213ENST00000483216 BAZ2BQ9UIF8 2168 aaKnown RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 CDK5RAP2Q96SN8 1893 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 LRRC37AA6NMS7 1700 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 DDX60LQ5H9U9 1706 aaKnown RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 E7ESA3 106 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 ANHXE9PGG2 379 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 F5H6K3 240 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 H0Y626 953 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 H3BNH8 94 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 ANGPT2O15123 496 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 CHADO15335 359 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 CLDN3O15551 220 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 RAD51DO75771 328 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 AKAP3O75969 853 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 CLPXO76031 633 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 TRIM16O95361 564 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 SERPINE1P05121 402 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 MMP10P09238 476 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 ATP6V1B1P15313 513 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 CD1DP15813 335 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 BCL3P20749 454 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 IVDP26440 423 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 DCKP27707 260 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 NUDT1P36639 197 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 SLC12A3P55017 1021 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 AQP5P55064 265 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 AQP4P55087 323 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 GNG2P59768 71 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 FKBP1BP68106 108 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 MSLNQ13421 630 aaPredicted RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 C3AR1Q16581 482 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 DGUOKQ16854 277 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 CEP55Q53EZ4 464 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 SAMD4BQ5PRF9 694 aaKnown RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 C9orf66Q5T8R8 295 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 C12orf60Q5U649 245 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 AGAP7PQ5VUJ5 663 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 RFWD3Q6PCD5 774 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 Q6ZR54 194 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 CDR2LQ86X02 465 aaPredicted RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 ERO1BQ86YB8 467 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 PGAM4Q8N0Y7 254 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 OR8H3Q8N146 312 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 C4orf33Q8N1A6 199 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 CENPSQ8N2Z9 138 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 ELMOD1Q8N336 334 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 FGFRL1Q8N441 504 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 SFRP1Q8N474 314 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 LINC00612Q8N6U2 182 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 OR7G1Q8NGA0 311 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 C8orf46Q8TAG6 207 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 SUN5Q8TC36 379 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 KRT35Q92764 455 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 ASB9Q96DX5 294 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 DUS3LQ96G46 650 aaKnown RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 CNBD2Q96M20 576 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 PLIN2Q99541 437 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 DDX50Q9BQ39 737 aaKnown RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 IDI2Q9BXS1 227 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 MROQ9BYG7 248 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 NMUR2Q9GZQ4 415 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 MTIF3Q9H2K0 278 aaKnown RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 SRD5A3Q9H8P0 318 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 PSTPIP2Q9H939 334 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 GPN2Q9H9Y4 310 aaPredicted RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 WDR41Q9HAD4 459 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 CXorf21Q9HAI6 301 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 TMEM165Q9HC07 324 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 SLCO1B3Q9NPD5 702 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 UBE2TQ9NPD8 197 aaPredicted RBP4.67□□□□□ -1.66
USP40-213ENST00000483216 FKBP14Q9NWM8 211 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 ANKMY1Q9P2S6 941 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 DNAJB9Q9UBS3 223 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 MAD2L2Q9UI95 211 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 PSME2Q9UL46 239 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 AP3M1Q9Y2T2 418 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 TMED7Q9Y3B3 224 aa4.67□□□□□ -1.66
USP40-213ENST00000483216 AUP1Q9Y679 476 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms