RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	RPS6KB2	Q9UBS0	482 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	ICAM5	Q9UMF0	924 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	MGAT4B	Q9UQ53	548 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	PCDHGB5	Q9Y5G0	923 aa		10.25	□□□□□ -0.77
APTX-223	ENST00000479656	LOC100130705	A0A1B0GUX0	176 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	NKX2-8	O15522	239 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	EIF4E2	O60573	245 aa	Known RBP	10.24	□□□□□ -0.77
APTX-223	ENST00000479656	ENDOU	P21128	410 aa	Known RBP	10.24	□□□□□ -0.77
APTX-223	ENST00000479656	EPHA2	P29317	976 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	PTGDS	P41222	190 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	CASP3	P42574	277 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	GAS1	P54826	345 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	C17orf67	Q0P5P2	114 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	ALG10B	Q5I7T1	473 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF468	Q5VIY5	522 aa	Predicted RBP	10.24	□□□□□ -0.77
APTX-223	ENST00000479656	C1orf94	Q6P1W5	598 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	ULK3	Q6PHR2	472 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	KLHL17	Q6TDP4	642 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	LINC00471	Q8N535	108 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF555	Q8NEP9	628 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	TOR1AIP2	Q8NFQ8	470 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	ZNF563	Q8TA94	476 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	GPA33	Q99795	319 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	METTL7A	Q9H8H3	244 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	ATP13A2	Q9NQ11	1180 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	UBAP1	Q9NZ09	502 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	KLRF1	Q9NZS2	232 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656	POFUT2	Q9Y2G5	429 aa		10.24	□□□□□ -0.77
APTX-223	ENST00000479656		H0YAE9	185 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	TP53I11	O14683	189 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	GNB5	O14775	395 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	CHP2	O43745	196 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	PIP5K1C	O60331	668 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	NUDT14	O95848	222 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	CDH2	P19022	906 aa	Predicted RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	P2RX1	P51575	399 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	NPRL3	Q12980	569 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	PDK3	Q15120	406 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	TOMM34	Q15785	309 aa	Predicted RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	ACER2	Q5QJU3	275 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	TTC23	Q5W5X9	447 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	MBOAT2	Q6ZWT7	520 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	CHERP	Q8IWX8	916 aa	Known RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	NRM	Q8IXM6	262 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	MARVELD2	Q8N4S9	558 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	OR5W2	Q8NH69	310 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	B4GALNT2	Q8NHY0	566 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	RNF138	Q8WVD3	245 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	TMEM239	Q8WW34	195 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	FER1L6-AS2	Q96M78	137 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	MUS81	Q96NY9	551 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	ANKRD60	Q9BZ19	345 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	UCK2	Q9BZX2	261 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	GRIP2	Q9C0E4	1043 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	ANKRD10	Q9NXR5	420 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	STMN3	Q9NZ72	180 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	AHCTF1	Q8WYP5	2266 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656		B4DXG7	233 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	SLC16A6	O15403	523 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	ADA	P00813	363 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	PRKAR1A	P10644	381 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	WT1	P19544	449 aa	Predicted RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	ITGA3	P26006	1051 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	MST1	P26927	711 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	IFNGR2	P38484	337 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	OMP	P47874	163 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	SLC6A8	P48029	635 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	UGT2B15	P54855	530 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	AIMP2	Q13155	320 aa	Known RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	CLN3	Q13286	438 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	INPP5J	Q15735	1006 aa	Predicted RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	MEP1A	Q16819	746 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	COL28A1	Q2UY09	1125 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	TBC1D25	Q3MII6	688 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	PRAMEF20	Q5VT98	475 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	WBP2NL	Q6ICG8	309 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	LINC00114	Q6XXX2	140 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656		Q6ZPB1	254 aa	Predicted RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	P3H2	Q8IVL5	708 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	MISP	Q8IVT2	679 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	PFN4	Q8NHR9	129 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	PIGX	Q8TBF5	258 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	GNPDA2	Q8TDQ7	276 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	DNAJA4	Q8WW22	397 aa	Predicted RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	C3orf49	Q96BT1	292 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	NXPE2	Q96DL1	559 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	FAM46A	Q96IP4	442 aa	Known RBP	10.23	□□□□□ -0.77
APTX-223	ENST00000479656	SCNM1	Q9BWG6	230 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	DGCR6L	Q9BY27	220 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	HPF1	Q9NWY4	346 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	SELENON	Q9NZV5	590 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	CNIH4	Q9P003	139 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	MED11	Q9P086	117 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	REV1	Q9UBZ9	1251 aa		10.23	□□□□□ -0.77
APTX-223	ENST00000479656	CEP250	Q9BV73	2442 aa		10.22	□□□□□ -0.77
APTX-223	ENST00000479656	ARGFX	A6NJG6	315 aa		10.22	□□□□□ -0.77
APTX-223	ENST00000479656	KPNA4	O00629	521 aa	Predicted RBP	10.22	□□□□□ -0.77
APTX-223	ENST00000479656	CDC40	O60508	579 aa	Known RBP eCLIP	10.22	□□□□□ -0.77
APTX-223	ENST00000479656	IGFBP1	P08833	259 aa	Predicted RBP	10.22	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms