RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 VPS37AQ8NEZ2 397 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 TOR1AIP2Q8NFQ8 470 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 GPR119Q8TDV5 335 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 RAB8BQ92930 207 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 TESCQ96BS2 214 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 PIK3IP1Q96FE7 263 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 SRXN1Q9BYN0 137 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 NMUR2Q9GZQ4 415 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 C12orf49Q9H741 205 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 EXD2Q9NVH0 621 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 MKLN1Q9UL63 735 aa14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 RAI1Q7Z5J4 1906 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-205ENST00000472524 ABCA2Q9BZC7 2435 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 DEFB108AA8MXU0 73 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 C9JVG2 144 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 E9PBE3 544 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 SDHDO14521 159 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 EIF4E2O60573 245 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 FCMRO60667 390 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 SCN2BO60939 215 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 ALDOCP09972 364 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 KITP10721 976 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 CRYGSP22914 178 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 ADH6P28332 368 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 S100A3P33764 101 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 CHI3L1P36222 383 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 WDR4P57081 412 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 CBFBQ13951 182 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 QPRTQ15274 297 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 DPY19L1Q2PZI1 675 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 ARHGAP11BQ3KRB8 267 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 TMEM176BQ3YBM2 270 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 FAM174BQ3ZCQ3 159 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 BIVMQ86UB2 503 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 OR5W2Q8NH69 310 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 ZFP90Q8TF47 636 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 ABHD3Q8WU67 409 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 XAGE5Q8WWM1 108 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 CPNE4Q96A23 557 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 ZNF524Q96C55 264 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 REXO5Q96IC2 774 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 C18orf12Q96KH6 178 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 MRGPRX4Q96LA9 322 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 ZNF350Q9GZX5 532 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 TIGARQ9NQ88 270 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 PLSCR4Q9NRQ2 329 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 GLRX2Q9NS18 164 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 MARCOQ9UEW3 520 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 KCNE5Q9UJ90 142 aa14.04□□□□□ -0.16
CCDC88B-205ENST00000472524 GOLGA8QA0A0J9YX86 632 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 GOLGA8OA6NCC3 632 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 GJE1A6NN92 205 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 GOLGA8NF8WBI6 632 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 UGT2B17O75795 530 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 CSTAP01040 98 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 UBTFL6P0CB48 400 aaPredicted RBP14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 AGTR1P30556 359 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 SLC7A1P30825 629 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 KHKP50053 298 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 UFM1P61960 85 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 SELENBP1Q13228 472 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 CASP8Q14790 479 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 ZNF141Q15928 474 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 ATAD3BQ5T9A4 648 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 SAXO2Q658L1 398 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 GTF2IRD2BQ6EKJ0 949 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 HEPHL1Q6MZM0 1159 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 GTF2IRD2Q86UP8 949 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 STK32CQ86UX6 486 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 CXorf67Q86X51 503 aaPredicted RBP14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 LRRC34Q8IZ02 419 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 MIPOL1Q8TD10 442 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 RNF128Q8TEB7 428 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 TEX37Q96LM6 180 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 SLC35A5Q9BS91 424 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 THUMPD3Q9BV44 507 aaKnown RBP14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 COQ10BQ9H8M1 238 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 UBTD1Q9HAC8 227 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 AIG1Q9NVV5 245 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 WDR45Q9Y484 360 aa14.03□□□□□ -0.16
CCDC88B-205ENST00000472524 IGHV3-15A0A0B4J1V0 119 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 A0A1W2PNR3 127 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 KIAA0513O60268 411 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 NTN1O95631 604 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 AGR2O95994 175 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 C1QCP02747 245 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 INHBBP09529 407 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 PABPC4LP0CB38 370 aaKnown RBP14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 EPHA3P29320 983 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 ADSLP30566 484 aaPredicted RBP14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 MAGOHP61326 146 aaKnown RBP14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 NKX6-1P78426 367 aaPredicted RBP14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 FUT5Q11128 374 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 SKP2Q13309 424 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 MAPK14Q16539 360 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 TMEM201Q5SNT2 666 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 NXNQ6DKJ4 435 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 TYW3Q6IPR3 259 aaKnown RBP14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 OGFOD2Q6N063 350 aa14.02□□□□□ -0.17
CCDC88B-205ENST00000472524 STAC2Q6ZMT1 411 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms