RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	MAGEB3	O15480	346 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	TBL1X	O60907	577 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	ECI2	O75521	394 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	CA1	P00915	261 aa	Predicted RBP	2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	IQCF3	P0C7M6	154 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	CCDC166	P0CW27	439 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	RPA2	P15927	270 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	PSMB1	P20618	241 aa	Known RBP	2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	ATP6V1C1	P21283	382 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	VDAC1	P21796	283 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	PSMA5	P28066	241 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	GCK	P35557	465 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	HPCAL1	P37235	193 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	DIO3	P55073	304 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	HSD17B7	P56937	341 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	KRTAP10-3	P60369	221 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	LYZ	P61626	148 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	CBX1	P83916	185 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	BCL2L1	Q07817	233 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	EGFEM1P	Q0D2K5	195 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	ELAVL3	Q14576	367 aa	Known RBP	2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	MXD4	Q14582	209 aa	Predicted RBP	2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	GGTA1P	Q4G0N0	100 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	GALNT17	Q6IS24	598 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	KIAA1328	Q86T90	577 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	ACOT1	Q86TX2	421 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	SKA3	Q8IX90	412 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	SVOPL	Q8N434	492 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	C14orf178	Q8N769	122 aa	Predicted RBP	2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	ANKFN1	Q8N957	763 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	ZNF540	Q8NDQ6	660 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	OR2T3	Q8NH03	318 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	RPL3L	Q92901	407 aa	Known RBP	2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	MAPKAP1	Q9BPZ7	522 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	ERP44	Q9BS26	406 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	TUBGCP2	Q9BSJ2	902 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	CHIA	Q9BZP6	476 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	NAT10	Q9H0A0	1025 aa	Known RBP	2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	SMYD3	Q9H7B4	428 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	FANCF	Q9NPI8	374 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	NANS	Q9NR45	359 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	NUDT15	Q9NV35	164 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	DCDC2	Q9UHG0	476 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	MAB21L2	Q9Y586	359 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	ALG6	Q9Y672	507 aa		2.72	□□□□□ -1.97
PTCD3-209	ENST00000472044	SMIM28	A0A1B0GU29	152 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	FCN1	O00602	326 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	TAPBP	O15533	448 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	TPST2	O60704	377 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	KIAA0754	O94854	1291 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	LALBA	P00709	142 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	UQCRC2	P22695	453 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	TTC23	Q5W5X9	447 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	WDR74	Q6RFH5	385 aa	Predicted RBP	2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	MOB3B	Q86TA1	216 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	TPRA1	Q86W33	373 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	ZNF683	Q8IZ20	524 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	DHRSX	Q8N5I4	330 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	KIR3DL3	Q8N743	410 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	ZNF564	Q8TBZ8	553 aa	Predicted RBP	2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	TRIM44	Q96DX7	344 aa	Predicted RBP	2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	SH3YL1	Q96HL8	342 aa	Predicted RBP	2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	MAGEB18	Q96M61	343 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	AMDHD1	Q96NU7	426 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	SMIM14	Q96QK8	99 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	IL4I1	Q96RQ9	567 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	ZNF670	Q9BS34	389 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	SLC35A5	Q9BS91	424 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	NIPSNAP3B	Q9BS92	247 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	NMUR2	Q9GZQ4	415 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	SIGLEC8	Q9NYZ4	499 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	PIPOX	Q9P0Z9	390 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	RNF14	Q9UBS8	474 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	WARS2	Q9UGM6	360 aa	Known RBP	2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	RPH3AL	Q9UNE2	315 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	ERVW-1	Q9UQF0	538 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	MAD1L1	Q9Y6D9	718 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	PNPLA6	Q8IY17	1366 aa		2.71	□□□□□ -1.98
PTCD3-209	ENST00000472044	TMEM110-MUSTN1	A8MSY1	372 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044		E7ESA3	106 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044		G3V4G9	280 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044		K7EQM0	130 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	HDAC3	O15379	428 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	RS1	O15537	224 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	HCN1	O60741	890 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	SPAG6	O75602	509 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	RHOBTB1	O94844	696 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	IGHV3-48	P01763	117 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	IGHG4	P01861	327 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	OR8U8	P0C7N1	319 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	DNAH10OS	P0CZ25	163 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	RNH1	P13489	461 aa	Known RBP	2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	PTMS	P20962	102 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	CALB2	P22676	271 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	ZBTB25	P24278	435 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	NTS	P30990	170 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	EPHX2	P34913	555 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	BTD	P43251	543 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	P2RY1	P47900	373 aa		2.7	□□□□□ -1.98
PTCD3-209	ENST00000472044	PLK1	P53350	603 aa		2.7	□□□□□ -1.98

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