RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 GARNL3Q5VVW2 1013 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 RSBN1Q5VWQ0 802 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 CNIH2Q6PI25 160 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF517Q6ZMY9 492 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 OOSP2Q86WS3 158 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 GDPD1Q8N9F7 314 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 AVL9Q8NBF6 648 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 CYB561A3Q8NBI2 242 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 OR10H4Q8NGA5 316 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 TOE1Q96GM8 510 aaKnown RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 SENP5Q96HI0 755 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 JAM3Q9BX67 310 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 C11orf54Q9H0W9 315 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 FN3KQ9H479 309 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 TMEM27Q9HBJ8 222 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 CMC2Q9NRP2 79 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 HCN3Q9P1Z3 774 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 MMP17Q9ULZ9 603 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 DTX4Q9Y2E6 619 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 LAMA1P25391 3075 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 A0A0B4J2E0 115 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 A0A1B0GWA3 101 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 A0A1B0GX12 115 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 DAPL1A0PJW8 107 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 SHISA7A6NL88 538 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 PRR23D1E9PI22 279 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 RNF13O43567 381 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 PTP4A3O75365 173 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 AK1P00568 194 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 CSF2P04141 144 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 GYPBP06028 91 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 THEGLP0DJG4 465 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 PRR23D2P0DMB1 279 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 CTSEP14091 401 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ASAH1Q13510 395 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ERV3-1Q14264 604 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 Q6ZS52 159 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 RAB43Q86YS6 212 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 Q8N9G6 341 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 OR6F1Q8NGZ6 308 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 TNFRSF13CQ96RJ3 184 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 TEAD3Q99594 435 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF559Q9BR84 538 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 RNF32Q9H0A6 362 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ASB6Q9NWX5 421 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 BABAM2Q9NXR7 383 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 NDRG2Q9UN36 371 aaKnown RBP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 FAM86C2PA6NEL3 165 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 CCDC182A6NF36 153 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 OR5K4A6NMS3 321 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 B4DGG1 531 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 C10orf142B7Z368 130 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 E9PI62 339 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 GTPBP1O00178 669 aaKnown RBP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 GNB5O14775 395 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 PLA2G10O15496 165 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 PPP1R3DO95685 299 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ATXN8OSP0DMR3 200 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ACAA2P42765 397 aaKnown RBP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 PPP3R1P63098 170 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 MAT1AQ00266 395 aaKnown RBP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 CCINQ13939 588 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 FAM53BQ14153 422 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 CRMP1Q14194 572 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 NNATQ16517 81 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF544Q6NX49 715 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ARMC6Q6NXE6 501 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF613Q6PF04 617 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 NR2C2APQ86WQ0 139 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 HEATR5AQ86XA9 2040 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 SLC44A3Q8N4M1 653 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 ARHGEF39Q8N4T4 335 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 PEX11GQ96HA9 241 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 COQ7Q99807 217 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 GPR174Q9BXC1 333 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 SLC22A4Q9H015 551 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 PPIL3Q9H2H8 161 aaKnown RBP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 SEMA6CQ9H3T2 930 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 C8orf33Q9H7E9 229 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-217ENST00000466159 FOLH1BQ9HBA9 442 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 POMT2Q9UKY4 750 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 GRIP1Q9Y3R0 1128 aa8.26□□□□□ -1.09
SYNE1-217ENST00000466159 MEIOCA2RUB1 952 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 SLC9B1P1A6NJY1 282 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 A8MV72 311 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 CHP2O43745 196 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 CTBP2P56545 445 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 GALEQ14376 348 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 ALG10BQ5I7T1 473 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 FAM27D1Q5T7N8 215 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 KIAA0895LQ68EN5 471 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 OAFQ86UD1 273 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 MCATQ8IVS2 390 aaKnown RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 OR4C6Q8NH72 309 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 ZDHHC1Q8WTX9 485 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 HOXB13Q92826 284 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 RIT1Q92963 219 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 RBM18Q96H35 190 aaKnown RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 SPACA7Q96KW9 195 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms