RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 SERHL2Q9H4I8 314 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 PPP4R1LQ9P1A2 415 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 FOXD3Q9UJU5 478 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 MRTO4Q9UKD2 239 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 CBLCQ9ULV8 474 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 FAF1Q9UNN5 650 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 RPH3AQ9Y2J0 694 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 TEP1Q99973 2627 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 EEF1E1-BLOC1S5C9J1V9 151 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 EEF1E1O43324 174 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 SCO2O43819 266 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 GMNNO75496 209 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 AGR2O95994 175 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 HMGN2P05204 90 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 ARAFP10398 606 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 POU3F2P20265 443 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 ATP6V1B2P21281 511 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 MATN1P21941 496 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 DPP4P27487 766 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 OPRM1P35372 400 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 STARP49675 285 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 CLK3P49761 638 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 PSMD4P55036 377 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 RPS26P62854 115 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 VEZF1Q14119 521 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 CDC73Q6P1J9 531 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 TNFAIP8L2Q6P589 184 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 C9orf106Q8NAJ2 232 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 TUBA1CQ9BQE3 449 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 PCDHAC1Q9H158 963 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 PIF1Q9H611 641 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 A4GALTQ9NPC4 353 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 SDHAF3Q9NRP4 125 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 DNAJB12Q9NXW2 375 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 EGFL7Q9UHF1 273 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 USP22Q9UPT9 525 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 MED12Q93074 2177 aa16.3■□□□□ 0.2
SQSTM1-204ENST00000453046 SPG11Q96JI7 2443 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 AQP12BA6NM10 295 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 GSTA4O15217 222 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 TMIGD3P0DMS9 266 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 EVI2BP34910 448 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 MSX2P35548 267 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 PRKAG1P54619 331 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 GFRA1P56159 465 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 DSCR4P56555 118 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 ADRM1Q16186 407 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 EXOSC6Q5RKV6 272 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 AQP12AQ8IXF9 295 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 C10orf67Q8IYJ2 551 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 METTL25Q8N6Q8 603 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 CDRT4Q8N9R6 151 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 BHLHE22Q8NFJ8 381 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 OR52E4Q8NGH9 312 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 HOXB13Q92826 284 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 LRGUKQ96M69 825 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 TM9SF2Q99805 663 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 OR51I1Q9H343 314 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 CRIM1Q9NZV1 1036 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 P2RX2Q9UBL9 471 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 ANGPT4Q9Y264 503 aa16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 MRPS18CQ9Y3D5 142 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-204ENST00000453046 TMEM247A6NEH6 219 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 TTC36A6NLP5 189 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 DUXAA6NLW8 204 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 CLCA1A8K7I4 914 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 HMGN4O00479 90 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 CXCR6O00574 342 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 SOX30O94993 753 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 NUDT7P0C024 238 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 CHMP24386 653 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 GAS1P54826 345 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 CCNIQ14094 377 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 SCARB2Q14108 478 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 FBXL19-AS1Q494R0 122 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 INTS11Q5TA45 600 aaKnown RBP16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 POMZP3Q6PJE2 187 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 CHMP1BQ7LBR1 199 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 KIF18BQ86Y91 864 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 HIPK4Q8NE63 616 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 RNF138Q8WVD3 245 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 POP5Q969H6 163 aaKnown RBP16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 NSMCE2Q96MF7 247 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 ZFP3Q96NJ6 502 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 STACQ99469 402 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 POLDIP3Q9BY77 421 aaKnown RBP16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 DSN1Q9H410 356 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 PTGES2Q9H7Z7 377 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 GORASP2Q9H8Y8 452 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 EQTNQ9NQ60 294 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 ABCG2Q9UNQ0 655 aa16.28■□□□□ 0.2
SQSTM1-204ENST00000453046 ZIC3O60481 467 aa16.27■□□□□ 0.2
SQSTM1-204ENST00000453046 CTAG2O75638 210 aa16.27■□□□□ 0.2
SQSTM1-204ENST00000453046 IL18BPO95998 194 aa16.27■□□□□ 0.2
SQSTM1-204ENST00000453046 C8BP07358 591 aa16.27■□□□□ 0.2
SQSTM1-204ENST00000453046 HK1P19367 917 aa16.27■□□□□ 0.2
SQSTM1-204ENST00000453046 GABRA3P34903 492 aa16.27■□□□□ 0.2
SQSTM1-204ENST00000453046 LHX2P50458 406 aa16.27■□□□□ 0.2
SQSTM1-204ENST00000453046 CASP9P55211 416 aa16.27■□□□□ 0.2
SQSTM1-204ENST00000453046 CDK6Q00534 326 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms