RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 QPRTQ15274 297 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 TOMM34Q15785 309 aaPredicted RBP13.65□□□□□ -0.22
LIMS3-201ENST00000437679 MAPK14Q16539 360 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 SYPL1Q16563 259 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 HBMQ6B0K9 141 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 LUZP2Q86TE4 346 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 STON2Q8WXE9 905 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 TMEM234Q8WY98 164 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 GTF2H4Q92759 462 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 ADGRG7Q96K78 797 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 LURAP1Q96LR2 239 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 RBM24Q9BX46 236 aaKnown RBP13.65□□□□□ -0.22
LIMS3-201ENST00000437679 MTHFD2LQ9H903 347 aaPredicted RBP13.65□□□□□ -0.22
LIMS3-201ENST00000437679 RNF122Q9H9V4 155 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 CCDC167Q9P0B6 97 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 P2RX2Q9UBL9 471 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 MPDZO75970 2070 aa13.65□□□□□ -0.22
LIMS3-201ENST00000437679 DCHS2Q6V1P9 2916 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 A0A0J9YW62 118 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 TMEM247A6NEH6 219 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 NR5A2O00482 541 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 CXCL13O43927 109 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 EDF1O60869 148 aaKnown RBP13.64□□□□□ -0.23
LIMS3-201ENST00000437679 CHRM4P08173 479 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 IL11P20809 199 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 PGM1P36871 562 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 DSTNP60981 165 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 KCNJ10P78508 379 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 SELENBP1Q13228 472 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 SNTB1Q13884 538 aaKnown RBP13.64□□□□□ -0.23
LIMS3-201ENST00000437679 GNA13Q14344 377 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 SQLEQ14534 574 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 CTU2Q2VPK5 515 aaKnown RBP13.64□□□□□ -0.23
LIMS3-201ENST00000437679 GTDC1Q4AE62 458 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 SLC25A53Q5H9E4 307 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 SLC2A7Q6PXP3 512 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 BLOC1S3Q6QNY0 202 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 HMGN2P46Q86SG4 172 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 ATP6V1C2Q8NEY4 427 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 ST8SIA1Q92185 356 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 PMM1Q92871 262 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 ZG16BQ96DA0 208 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 SPDL1Q96EA4 605 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 THOC1Q96FV9 657 aaKnown RBP13.64□□□□□ -0.23
LIMS3-201ENST00000437679 SIKE1Q9BRV8 207 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 SLC38A1Q9H2H9 487 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 RAD21L1Q9H4I0 556 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 RABEP2Q9H5N1 569 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 TIGARQ9NQ88 270 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 TMEM45AQ9NWC5 275 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 ZNF446Q9NWS9 450 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 THUMPD1Q9NXG2 353 aaKnown RBP13.64□□□□□ -0.23
LIMS3-201ENST00000437679 CALML5Q9NZT1 146 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 DCTN4Q9UJW0 460 aa13.64□□□□□ -0.23
LIMS3-201ENST00000437679 LRBAP50851 2863 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 UQCRHLA0A096LP55 91 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 A0A096LPI6 279 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 TUBAL3A6NHL2 446 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 AGAP5A6NIR3 686 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 A8MXE2 369 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 MSTNO14793 375 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 DNAJA2O60884 412 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 SMNDC1O75940 238 aaKnown RBP eCLIP13.63□□□□□ -0.23
LIMS3-201ENST00000437679 AQP8O94778 261 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 NTN1O95631 604 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 PLGP00747 810 aaPredicted RBP13.63□□□□□ -0.23
LIMS3-201ENST00000437679 ETFAP13804 333 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 NCF2P19878 526 aaPredicted RBP13.63□□□□□ -0.23
LIMS3-201ENST00000437679 CARD18P57730 90 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 SESN3P58005 492 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 SIRPAP78324 504 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 SORDQ00796 357 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 TMEM176BQ3YBM2 270 aaPredicted RBP13.63□□□□□ -0.23
LIMS3-201ENST00000437679 AGKQ53H12 422 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 HSP90B2PQ58FF3 399 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 VWA1Q6PCB0 445 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 FUNDC1Q8IVP5 155 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 CMIPQ8IY22 773 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 PEX5LQ8IYB4 626 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 ZZZ3Q8IYH5 903 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 ARFGAP2Q8N6H7 521 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 FAM71CQ8NEG0 241 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 ZNF563Q8TA94 476 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 WDR60Q8WVS4 1066 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 OSTF1Q92882 214 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 STARD4Q96DR4 205 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 AURKBQ96GD4 344 aaPredicted RBP13.63□□□□□ -0.23
LIMS3-201ENST00000437679 PAIP1Q9H074 479 aaKnown RBP13.63□□□□□ -0.23
LIMS3-201ENST00000437679 QRSL1Q9H0R6 528 aaKnown RBP13.63□□□□□ -0.23
LIMS3-201ENST00000437679 NPHS2Q9NP85 383 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 EXOSC3Q9NQT5 275 aaKnown RBP13.63□□□□□ -0.23
LIMS3-201ENST00000437679 SERINC1Q9NRX5 453 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 TRIM33Q9UPN9 1127 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 PCDHB14Q9Y5E9 798 aa13.63□□□□□ -0.23
LIMS3-201ENST00000437679 FBN2P35556 2912 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 CLIC1O00299 241 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 ETV2O00321 342 aaPredicted RBP13.62□□□□□ -0.23
LIMS3-201ENST00000437679 EFNA2O43921 213 aa13.62□□□□□ -0.23
LIMS3-201ENST00000437679 DBIP07108 87 aaKnown RBP13.62□□□□□ -0.23
LIMS3-201ENST00000437679 PABPC4LP0CB38 370 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms