RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NPIPA7E9PJI5 369 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 M0QX08 132 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 KRT36O76013 467 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 PRKD3O94806 890 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 IGKV1D-16P01601 117 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 DBIP07108 87 aaKnown RBP11.06□□□□□ -0.64
PTPRF-208ENST00000437607 THBS1P07996 1170 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 GUSBP08236 651 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 HOXD4P09016 255 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-208ENST00000437607 PABPC4LP0CB38 370 aaKnown RBP11.06□□□□□ -0.64
PTPRF-208ENST00000437607 NPIPA8P0DM63 369 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 HPGDP15428 266 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 RPS4Y1P22090 263 aaKnown RBP11.06□□□□□ -0.64
PTPRF-208ENST00000437607 ABCD3P28288 659 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 PMPCAQ10713 525 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 EFR3AQ14156 821 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 IFI44LQ53G44 452 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 ZNF311Q5JNZ3 666 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 TBCELQ5QJ74 424 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 ARHGAP11AQ6P4F7 1023 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 ENPP6Q6UWR7 440 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 ADGRG5Q8IZF4 528 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 TMEM156Q8N614 296 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 SMYD1Q8NB12 490 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 PSD4Q8NDX1 1056 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 OR2M7Q8NG81 312 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 OR52P1PQ8NH57 321 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 OIT3Q8WWZ8 545 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 GEMIN6Q8WXD5 167 aaKnown RBP11.06□□□□□ -0.64
PTPRF-208ENST00000437607 RND1Q92730 232 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 DIO2Q92813 273 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 POM121Q96HA1 1249 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 SEPHS2Q99611 448 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 PINK1Q9BXM7 581 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 SAP130Q9H0E3 1048 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 QRSL1Q9H0R6 528 aaKnown RBP11.06□□□□□ -0.64
PTPRF-208ENST00000437607 ARMC7Q9H6L4 198 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 MAGIXQ9H6Y5 334 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 YY1AP1Q9H869 796 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 ZDHHC11Q9H8X9 412 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 PNPLA3Q9NST1 481 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 RYDENQ9NUL5 291 aaKnown RBP11.06□□□□□ -0.64
PTPRF-208ENST00000437607 KLHL28Q9NXS3 571 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 MYOTQ9UBF9 498 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 SLC9A8Q9Y2E8 581 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 LIPGQ9Y5X9 500 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 DNHD1Q96M86 4753 aa11.06□□□□□ -0.64
PTPRF-208ENST00000437607 AGAP5A6NIR3 686 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 FAM166BA8MTA8 275 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 H0Y3Z8 333 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 SCDO00767 359 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 FCMRO60667 390 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 GCM2O75603 506 aaPredicted RBP11.05□□□□□ -0.64
PTPRF-208ENST00000437607 PPM1BO75688 479 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 OR2J2O76002 312 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 OR6B1O95007 311 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 MFN2O95140 757 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 UTS2O95399 124 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 RAP2AP10114 183 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 FCGR1AP12314 374 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 NID1P14543 1247 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 IL7RP16871 459 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 CD247P20963 164 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 SLC7A1P30825 629 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 PRKAR1BP31321 381 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 DNAJA1P31689 397 aaKnown RBP11.05□□□□□ -0.64
PTPRF-208ENST00000437607 SSR4P51571 173 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 ART1P52961 327 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 CRYBA2P53672 197 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 RCN1Q15293 331 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 PDZK1Q5T2W1 519 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 RNF220Q5VTB9 566 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 AAGABQ6PD74 315 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 DHRS4L2Q6PKH6 230 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 OPN5Q6U736 354 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 VTCN1Q7Z7D3 282 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 HMGN2P46Q86SG4 172 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 ZAR1Q86SH2 424 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 SLC15A4Q8N697 577 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 FAM86B1Q8N7N1 296 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 FAM110BQ8TC76 370 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 CANT1Q8WVQ1 401 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 ASB15Q8WXK1 588 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 PYURFQ96I23 114 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 RASL10BQ96S79 203 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 ADOQ96SZ5 270 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 DOHHQ9BU89 302 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 HOXD1Q9GZZ0 328 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 MTHFD2LQ9H903 347 aaPredicted RBP11.05□□□□□ -0.64
PTPRF-208ENST00000437607 KCNJ16Q9NPI9 418 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 TIMMDC1Q9NPL8 285 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 ZNF232Q9UNY5 417 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 YARS2Q9Y2Z4 477 aaKnown RBP11.05□□□□□ -0.64
PTPRF-208ENST00000437607 NPFFR2Q9Y5X5 522 aa11.05□□□□□ -0.64
PTPRF-208ENST00000437607 OR6C70A6NIJ9 312 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 NPIPA2E9PIF3 369 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 NPIPA3F8WFD2 350 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 G3V3Y1 287 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 H3BNH8 94 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 SYT5O00445 386 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms