RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 TBXA2RP21731 343 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 NTSP30990 170 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 PNLIPRP2P54317 469 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 MANFP55145 182 aaKnown RBP11.54□□□□□ -0.56
LINC00339-202ENST00000416769 ATP5J2P56134 94 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 EFR3AQ14156 821 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 CTU2Q2VPK5 515 aaKnown RBP11.54□□□□□ -0.56
LINC00339-202ENST00000416769 FITM2Q8N6M3 262 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 LILRB1Q8NHL6 650 aaPredicted RBP11.54□□□□□ -0.56
LINC00339-202ENST00000416769 DUSP19Q8WTR2 217 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 SPDL1Q96EA4 605 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 C1GALT1C1Q96EU7 318 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 ZBED6CLQ96FA7 236 aaPredicted RBP11.54□□□□□ -0.56
LINC00339-202ENST00000416769 PLPPR2Q96GM1 343 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 OR52E6Q96RD3 313 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 SLC39A3Q9BRY0 314 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 GLIPR2Q9H4G4 154 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 ZNF701Q9NV72 531 aaPredicted RBP11.54□□□□□ -0.56
LINC00339-202ENST00000416769 FAM120CQ9NX05 1096 aaKnown RBP11.54□□□□□ -0.56
LINC00339-202ENST00000416769 ARMCX1Q9P291 453 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 BTNL2Q9UIR0 455 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 OR10H1Q9Y4A9 318 aa11.54□□□□□ -0.56
LINC00339-202ENST00000416769 A0A1W2PP18 115 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 NDUFS7O75251 213 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 SLITRK5O94991 958 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 SOX30O94993 753 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 PRDX6P30041 224 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 KRT20P35900 424 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 PCYT1AP49585 367 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 CYLC2Q14093 348 aaPredicted RBP11.53□□□□□ -0.56
LINC00339-202ENST00000416769 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.53□□□□□ -0.56
LINC00339-202ENST00000416769 TMEM107Q6UX40 140 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 FAM214BQ7L5A3 538 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 PHC2Q8IXK0 858 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 ZNF619Q8N2I2 560 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 METTL25Q8N6Q8 603 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 ZFP28Q8NHY6 868 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 TMEM171Q8WVE6 324 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 OR5P2Q8WZ92 322 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 SLC9A6Q92581 669 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 AKAP1Q92667 903 aaKnown RBP eCLIP11.53□□□□□ -0.56
LINC00339-202ENST00000416769 CIDECQ96AQ7 238 aaPredicted RBP11.53□□□□□ -0.56
LINC00339-202ENST00000416769 AMDHD1Q96NU7 426 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 TMEM185BQ9H7F4 350 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 RMND5AQ9H871 391 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 PCDHGB4Q9UN71 923 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 LAMP3Q9UQV4 416 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 VDAC3Q9Y277 283 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 NDUFAF1Q9Y375 327 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 ZNF175Q9Y473 711 aa11.53□□□□□ -0.56
LINC00339-202ENST00000416769 NUP214P35658 2090 aaPredicted RBP11.52□□□□□ -0.57
LINC00339-202ENST00000416769 LOC100653049A0A140TA62 436 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 C9JVG2 144 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 NR5A2O00482 541 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 EIF1AYO14602 144 aaKnown RBP11.52□□□□□ -0.57
LINC00339-202ENST00000416769 HS3ST1O14792 307 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 PLOD3O60568 738 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 KRT34O76011 436 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 SOD3P08294 240 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 IFI6P09912 130 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 COX4I1P13073 169 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 IL11P20809 199 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 SHC1P29353 583 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 CDKN1AP38936 164 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 EIF1AXP47813 144 aaKnown RBP11.52□□□□□ -0.57
LINC00339-202ENST00000416769 RNF144AP50876 292 aaPredicted RBP11.52□□□□□ -0.57
LINC00339-202ENST00000416769 NCBP2P52298 156 aaKnown RBP eCLIP11.52□□□□□ -0.57
LINC00339-202ENST00000416769 EEF1A1P68104 462 aaKnown RBP11.52□□□□□ -0.57
LINC00339-202ENST00000416769 VEZF1Q14119 521 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 KRT72Q14CN4 511 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 TMEM44Q2T9K0 475 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 GRAMD1BQ3KR37 738 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 VPS26BQ4G0F5 336 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 BEX5Q5H9J7 111 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 EEF1A1P5Q5VTE0 462 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 TRPM8Q7Z2W7 1104 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 ZAR1Q86SH2 424 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 TREML1Q86YW5 311 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 GATSQ8NAP1 163 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 PSMA8Q8TAA3 256 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 VPS33AQ96AX1 596 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 ERP27Q96DN0 273 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 CMTM5Q96DZ9 223 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 CCDC115Q96NT0 180 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 TMEM204Q9BSN7 226 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 ACTR6Q9GZN1 396 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 C12orf49Q9H741 205 aa11.52□□□□□ -0.57
LINC00339-202ENST00000416769 LEF1Q9UJU2 399 aaPredicted RBP11.52□□□□□ -0.57
LINC00339-202ENST00000416769 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.52□□□□□ -0.57
LINC00339-202ENST00000416769 BBIP1A8MTZ0 92 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 UPK1AO00322 258 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 CXCL13O43927 109 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 UTS2O95399 124 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 C6orf47O95873 294 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 PAX1P15863 534 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 PTNP21246 168 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 SGCBQ16585 318 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 CLEC12BQ2HXU8 276 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 TIGD2Q4W5G0 525 aa11.51□□□□□ -0.57
LINC00339-202ENST00000416769 COQ5Q5HYK3 327 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms