RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 IL17RBQ9NRM6 502 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC17A6Q9P2U8 582 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 ZFP92A6NM28 416 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 ADH4P08319 380 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 F3P13726 295 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF17P17021 662 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 ARRB1P49407 418 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 RAB33AQ14088 237 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 TEX261Q6UWH6 196 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 U3KQ87 197 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 SPATA31A3Q5VYP0 1347 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 TCRBV7S2A1N4TA0A589 114 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 PRAMEF27A3QJZ7 478 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 RCAN2Q14206 197 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 PRAMEF9Q5VWM5 478 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 C1orf198Q9H425 327 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 GPR52Q9Y2T5 361 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 RAB13P51153 203 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 OR4D2P58180 307 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF33BQ06732 778 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 COL13A1Q5TAT6 717 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 VWA1Q6PCB0 445 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ASPGQ86U10 573 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 KCNA7Q96RP8 456 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 SPATA31C2B4DYI2 1134 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF701M0R085 212 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 HLCSP50747 726 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ERVFC1P60507 584 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 GAB1Q13480 694 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 IRF4Q15306 451 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF395Q9H8N7 513 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC2A4RGQ9NR83 387 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 MRPS14O60783 128 aaKnown RBP12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 EGFP01133 1207 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 TYRP14679 529 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 IL2RGP31785 369 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 KCNJ8Q15842 424 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 MBLAC2Q68D91 279 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 C11orf42Q8N5U0 333 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 OR5H6Q8NGV6 325 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ADAMTS18Q8TE60 1221 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 FBXW5Q969U6 566 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 INTS14Q96SY0 518 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 TLR9Q9NR96 1032 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 OR14J1Q9UGF5 321 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 OR6C68A6NDL8 312 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 GLB1L2Q8IW92 636 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 CNTN4Q8IWV2 1026 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 GLIS3Q8NEA6 775 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 OR2T11Q8NH01 316 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 SEZ6LQ9BYH1 1024 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 NTN4Q9HB63 628 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 LOC285095A0A1B0GVY8 99 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 GSRP00390 522 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF44P15621 663 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 TYRP1P17643 537 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 OPRL1P41146 370 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF852Q6ZMS4 543 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 CATSPERDQ86XM0 798 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 CPXM2Q8N436 756 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 GJD4Q96KN9 370 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 FCRL5Q96RD9 977 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 SPOCK3Q9BQ16 436 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 PTHP01270 115 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 IGFN1Q86VF2 1251 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ARL14EPQ8N8R7 260 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 YIPF5Q969M3 257 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 APH1AQ96BI3 265 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 MYADMQ96S97 322 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 LMF2Q9BU23 707 aaKnown RBP12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 NMES1Q9C002 83 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 SSUH2Q9Y2M2 353 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ADAMTS13Q76LX8 1427 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 CKAP5Q14008 2032 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 USP2O75604 605 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 GALTP07902 379 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 JAM2P57087 298 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 SEMG2Q02383 582 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 TGFBR3Q03167 851 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 PKDCCQ504Y2 493 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 SUSD1Q6UWL2 747 aa12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 LYRM2Q9NU23 88 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF728P0DKX0 622 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 AREGP15514 252 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 KLRK1P26718 216 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 CALCRP30988 508 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 ECI1P42126 302 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 ENTHD1Q8IYW4 607 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 OR5M8Q8NGP6 311 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 OR14L1PQ8NHC6 308 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC2A11Q9BYW1 496 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 LIN7BQ9HAP6 207 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 PIGVQ9NUD9 493 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 POLLQ9UGP5 575 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 SCN3AQ9NY46 2000 aa12.58□□□□□ -0.39
CCDC88A-204ENST00000413716 BRCC3P46736 316 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 GLYR1Q49A26 553 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 NIPA2Q8N8Q9 360 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 LRIT2A6NDA9 550 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 C2CD4BA6NLJ0 364 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms