RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 DCAF16Q9NXF7 216 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 FBXL4Q9UKA2 621 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 TLN1Q9Y490 2541 aaKnown RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 SMIM23A6NLE4 172 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 K7EPI3 171 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 CLDN4O14493 209 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 ADAM20O43506 726 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 ALOX12BO75342 701 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 UMODP07911 640 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SLC35E2BP0CK96 405 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 RNH1P13489 461 aaKnown RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 IL1RNP18510 177 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 KRT20P35900 424 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SLCO1A2P46721 670 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SLC6A12P48065 614 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 VWA2Q5GFL6 755 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 PAPPA-AS1Q5QFB9 102 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 PQLC2Q6ZP29 291 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 COX15Q7KZN9 410 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 VN1R4Q7Z5H5 301 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 CMC1Q7Z7K0 106 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 KLHDC8AQ8IYD2 350 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SPATA6LQ8N4H0 392 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 SLC44A1Q8WWI5 657 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 OR4K3Q96R72 315 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SLX1AQ9BQ83 275 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 TRMOQ9BU70 441 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 ILKAPQ9H0C8 392 aaPredicted RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 NSRP1Q9H0G5 558 aaKnown RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 PIGMQ9H3S5 423 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 SEBOXQ9HB31 216 aaPredicted RBP5.82□□□□□ -1.48
USP40-202ENST00000409945 SENP1Q9P0U3 644 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 FETUBQ9UGM5 382 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 TINAGQ9UJW2 476 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 NAALAD2Q9Y3Q0 740 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 HS3ST3B1Q9Y662 390 aa5.82□□□□□ -1.48
USP40-202ENST00000409945 MDC1Q14676 2089 aaKnown RBP5.81□□□□□ -1.48
USP40-202ENST00000409945 SGK494L7N484 410 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 P2RX6O15547 441 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 LCMT2O60294 686 aaKnown RBP5.81□□□□□ -1.48
USP40-202ENST00000409945 GALR3O60755 368 aaPredicted RBP5.81□□□□□ -1.48
USP40-202ENST00000409945 RDH16O75452 317 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 CEACAM4O75871 244 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 BMP10O95393 424 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 FHP07954 510 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 PSG1P11464 419 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 PLA2G2AP14555 144 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 HNF4AP41235 474 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 CAMPP49913 170 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 RAP1GDS1P52306 607 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 PGGT1BP53609 377 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 CHIT1Q13231 466 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 OR4D1Q15615 310 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 NSDHLQ15738 373 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 EXT1Q16394 746 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 DEFB134Q4QY38 66 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 TOR1AIP1Q5JTV8 583 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 C6orf141Q5SZD1 244 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 MED27Q6P2C8 311 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 LINGO2Q7L985 606 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 ISCA2Q86U28 154 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 ZNF740Q8NDX6 193 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 FDCSPQ8NFU4 85 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 OR11G2Q8NGC1 345 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 PPP4R1Q8TF05 950 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 KCTD4Q8WVF5 259 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 NXNL1Q96CM4 212 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 THOC3Q96J01 351 aaKnown RBP5.81□□□□□ -1.48
USP40-202ENST00000409945 LPAR4Q99677 370 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 PPP1R3EQ9H7J1 279 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 ACTR8Q9H981 624 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 ZNF160Q9HCG1 818 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 DECR2Q9NUI1 292 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 ELOVL5Q9NYP7 299 aa5.81□□□□□ -1.48
USP40-202ENST00000409945 CPSF2Q9P2I0 782 aaKnown RBP5.81□□□□□ -1.48
USP40-202ENST00000409945 PSMC3IPQ9P2W1 217 aaPredicted RBP5.81□□□□□ -1.48
USP40-202ENST00000409945 PTBP2Q9UKA9 531 aaKnown RBP5.81□□□□□ -1.48
USP40-202ENST00000409945 IGLV5-39A0A0G2JS06 123 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 TRIM49D1C9J1S8 452 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 UBXN8O00124 270 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 SOCS6O14544 535 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 TNFRSF13BO14836 293 aaPredicted RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 ERI3O43414 337 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 RGS14O43566 566 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 WISP3O95389 354 aaPredicted RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 STATHP02808 62 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 SERPINA7P05543 415 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 ZNF182P17025 639 aaPredicted RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 CSRP3P50461 194 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 CCNG1P51959 295 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 EEF1A2Q05639 463 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 RAPSNQ13702 412 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 EFTUD2Q15029 972 aaKnown RBP eCLIP5.8□□□□□ -1.48
USP40-202ENST00000409945 TMEM35AQ53FP2 167 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 FAM69BQ5VUD6 431 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 LIPJQ5W064 366 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 ISLR2Q6UXK2 745 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 CPEB2Q7Z5Q1 589 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 EXOC3L1Q86VI1 746 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms