RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CROCCP3Q8IVE0 287 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 SLC9A6Q92581 669 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 TP53INP1Q96A56 240 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 LCORQ96JN0 433 aaPredicted RBP12.33□□□□□ -0.43
LIMS1-204ENST00000409441 CNTNAP3BQ96NU0 1288 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 LMF2Q9BU23 707 aaKnown RBP12.33□□□□□ -0.43
LIMS1-204ENST00000409441 CNTNAP3Q9BZ76 1288 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 TRIM45Q9H8W5 580 aaPredicted RBP12.33□□□□□ -0.43
LIMS1-204ENST00000409441 ACOT13Q9NPJ3 140 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 IMPAD1Q9NX62 359 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 STMN3Q9NZ72 180 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 PSORS1C1Q9UIG5 152 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 NINQ8N4C6 2090 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 ACACBO00763 2458 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 SH3D21A4FU49 640 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 MAN1A2O60476 641 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 OR2J2O76002 312 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 GABARAPO95166 117 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 LGI1O95970 557 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 GASTP01350 101 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 CHRM4P08173 479 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 ALOX5P09917 674 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 OSMP13725 252 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 MASP1P48740 699 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 MAN2A2P49641 1150 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 ST13P50502 369 aaKnown RBP12.33□□□□□ -0.44
LIMS1-204ENST00000409441 NR0B1P51843 470 aaKnown RBP12.33□□□□□ -0.44
LIMS1-204ENST00000409441 CRISP1P54107 249 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 UGT2B15P54855 530 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 PSG6Q00889 435 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 FUT5Q11128 374 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 TBR1Q16650 682 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 UBE2UQ5VVX9 321 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 CDC73Q6P1J9 531 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 KLHL17Q6TDP4 642 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 SLC16A12Q6ZSM3 486 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 ARMC10Q8N2F6 343 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 ZNF441Q8N8Z8 693 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 C17orf47Q8NEP4 570 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 FDCSPQ8NFU4 85 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 GPR151Q8TDV0 419 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 ADAMTS15Q8TE58 950 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 HOXB13Q92826 284 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-204ENST00000409441 GTPBP3Q969Y2 492 aaKnown RBP12.33□□□□□ -0.44
LIMS1-204ENST00000409441 YIPF6Q96EC8 236 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 OTUB1Q96FW1 271 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-204ENST00000409441 SLC35A4Q96G79 324 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 OR7D2Q96RA2 312 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 FUZQ9BT04 418 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 COPS4Q9BT78 406 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 RSPO3Q9BXY4 272 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-204ENST00000409441 UCK2Q9BZX2 261 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 NXF5Q9H1B4 397 aaKnown RBP12.33□□□□□ -0.44
LIMS1-204ENST00000409441 PLGRKTQ9HBL7 147 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 GPR83Q9NYM4 423 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 ZNF226Q9NYT6 803 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 AASSQ9UDR5 926 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 TEKT2Q9UIF3 430 aa12.33□□□□□ -0.44
LIMS1-204ENST00000409441 TRBV4-1A0A0J9YWV2 114 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 A0A1W2PRQ8 180 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 TTC36A6NLP5 189 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 DUXAA6NLW8 204 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 CLCA1A8K7I4 914 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 UGT2B17O75795 530 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 CDK1P06493 297 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 ACP2P11117 423 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 MAP2K4P45985 399 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 IDH2P48735 452 aaKnown RBP12.32□□□□□ -0.44
LIMS1-204ENST00000409441 MLF1P58340 268 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 HPCAP84074 193 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 DGCR6Q14129 220 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 PTGES3Q15185 160 aaKnown RBP12.32□□□□□ -0.44
LIMS1-204ENST00000409441 TBCEQ15813 527 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-204ENST00000409441 NNATQ16517 81 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 DUSP5Q16690 384 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 GPAT3Q53EU6 434 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 ACER2Q5QJU3 275 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 EXOSC6Q5RKV6 272 aaKnown RBP12.32□□□□□ -0.44
LIMS1-204ENST00000409441 ATAD3BQ5T9A4 648 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 AGAP7PQ5VUJ5 663 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 NPSR1Q6W5P4 371 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 DEF8Q6ZN54 512 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 Q6ZPB1 254 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-204ENST00000409441 AHSA2Q719I0 299 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 OR4N2Q8NGD1 307 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 OR4D11Q8NGI4 311 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 VANGL1Q8TAA9 524 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-204ENST00000409441 TBC1D15Q8TC07 691 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 UBE2FQ969M7 185 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 CRELD1Q96HD1 420 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 PRRC1Q96M27 445 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 AGAP4Q96P64 663 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 TRNT1Q96Q11 434 aaKnown RBP12.32□□□□□ -0.44
LIMS1-204ENST00000409441 PIGUQ9H490 435 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 GIN1Q9NXP7 522 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 RHCGQ9UBD6 479 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 A4GNTQ9UNA3 340 aa12.32□□□□□ -0.44
LIMS1-204ENST00000409441 YARS2Q9Y2Z4 477 aaKnown RBP12.32□□□□□ -0.44
LIMS1-204ENST00000409441 TPRP12270 2363 aaKnown RBP12.32□□□□□ -0.44
LIMS1-204ENST00000409441 SH3PXD2BA1X283 911 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms