RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CLEC5AQ9NY25 188 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 RSPH14Q9UHP6 348 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF229Q9UJW7 825 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PCDHGB1Q9Y5G3 927 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PEX16Q9Y5Y5 336 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 KPTNQ9Y664 436 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 KCNE1BA0A087WTH5 132 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 KBTBD11-OT1A0A1B0GTJ5 212 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 GOLGA6L10A6NI86 522 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CCT8L1PA6NM43 557 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 A8MUA0 341 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 GOLGA8KD6RF30 607 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 NPIPA7E9PJI5 369 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CHST1O43916 411 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 RAMP3O60896 148 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 SH3BGRLO75368 114 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 TOXO94900 526 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 SYF2O95926 243 aaKnown RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 FGF2P09038 288 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 PNMA6AP0CW24 399 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 NPIPA8P0DM63 369 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CHRNB1P11230 501 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 DARSP14868 501 aaKnown RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF43P17038 809 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 KITLGP21583 273 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CFL1P23528 166 aaKnown RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 PSMB6P28072 239 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CD40LGP29965 261 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 RPL3P39023 403 aaKnown RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 NPBWR2P48146 333 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 ART1P52961 327 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 UBE2G2P60604 165 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 RAD51Q06609 339 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 PMS2P3Q13401 168 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 SNAI3Q3KNW1 292 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 PDSS1Q5T2R2 415 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 C1orf94Q6P1W5 598 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 BHLHB9Q6PI77 547 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF793Q6ZN11 406 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 Q6ZRG5 221 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 USP50Q70EL3 339 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 NIPA1Q7RTP0 329 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 RANBP3LQ86VV4 465 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 PLCZ1Q86YW0 608 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 MMAAQ8IVH4 418 aaKnown RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 DCUN1D3Q8IWE4 304 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CMTM8Q8IZV2 173 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CENPSQ8N2Z9 138 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 ELMOD1Q8N336 334 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 C17orf78Q8N4C9 275 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 LRRC75AQ8NAA5 344 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 FBXO36Q8NEA4 188 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 TTLQ8NG68 377 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 OR5T1Q8NG75 326 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 OR52N5Q8NH56 324 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 UBA3Q8TBC4 463 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 TEX47Q8TBZ9 253 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 FAM110BQ8TC76 370 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 TMEM255BQ8WV15 326 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CAPSLQ8WWF8 208 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CD101Q93033 1021 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 NXPE2Q96DL1 559 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CDCA3Q99618 268 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 SLC30A2Q9BRI3 323 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CNPY3Q9BT09 278 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 FAM49AQ9H0Q0 323 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 S100A14Q9HCY8 104 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 FGF21Q9NSA1 209 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 IL36GQ9NZH8 169 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 MYEF2Q9P2K5 600 aaKnown RBP3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CLN8Q9UBY8 286 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 POMT2Q9UKY4 750 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 SCML1Q9UN30 329 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 NPIPA1Q9UND3 350 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 FLVCR2Q9UPI3 526 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 CD109Q6YHK3 1445 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 TTC3P53804 2025 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 WDR7Q9Y4E6 1490 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 ARAP3Q8WWN8 1544 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 KIF21BO75037 1637 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 BIVM-ERCC5R4GMW8 1640 aa3.6□□□□□ -1.83
HMGB1-204ENST00000399489 TRBV5-5A0A0J9YX44 114 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 ZCWPW2A0A1B0GU75 182 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 G3V4G9 280 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 FBP2O00757 339 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 CFLARO15519 480 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 B4GAT1O43505 415 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 ITM2AO43736 263 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 SOX30O94993 753 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 DIRAS1O95057 198 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 CCNB2O95067 398 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 TMEM50AO95807 157 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 CA1P00915 261 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-204ENST00000399489 FCER2P06734 321 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 IDO1P14902 403 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 AOC1P19801 751 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 LHCGRP22888 699 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 DCKP27707 260 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 CDKN2AP42771 156 aaKnown RBP3.59□□□□□ -1.83
HMGB1-204ENST00000399489 RGRP47804 291 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms