RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 STK17BO94768 372 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 ADH7P40394 386 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 FOLR3P41439 243 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 TIGD6Q17RP2 521 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 PODNL1Q6PEZ8 512 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 FAM198BQ6UWH4 519 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 ZNF730Q6ZMV8 503 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 ZNF517Q6ZMY9 492 aaPredicted RBP16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 Q6ZPB1 254 aaPredicted RBP16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 PTCHD4Q6ZW05 846 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 ADCK1Q86TW2 530 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 GALNT6Q8NCL4 622 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 WDR36Q8NI36 951 aaKnown RBP16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 PIGXQ8TBF5 258 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC7A13Q8TCU3 470 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 DACH2Q96NX9 599 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 WFDC6Q9BQY6 131 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 FAM117AQ9C073 453 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 RYDENQ9NUL5 291 aaKnown RBP16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 FAIMQ9NVQ4 179 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 PTRH2Q9Y3E5 179 aaKnown RBP16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 B3GALT1Q9Y5Z6 326 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 LAMA1P25391 3075 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 REM1O75628 298 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 CSTAP01040 98 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 GPR143P51810 404 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 NR0B1P51843 470 aaKnown RBP16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 PNLIPRP2P54317 469 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 RNF4P78317 190 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 STPG1Q5TH74 334 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 RNLSQ5VYX0 342 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 C12orf73Q69YU5 71 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC46A3Q7Z3Q1 461 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 ZAR1Q86SH2 424 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC15A4Q8N697 577 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 NFAM1Q8NET5 270 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 OR4K5Q8NGD3 323 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 OR2Y1Q8NGV0 311 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 ACOT11Q8WXI4 607 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 EFHD2Q96C19 240 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 RNF31Q96EP0 1072 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 RHNO1Q9BSD3 238 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 LRFN3Q9BTN0 628 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 PARD6AQ9NPB6 346 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 GALNT8Q9NY28 637 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 REV1Q9UBZ9 1251 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 USP34Q70CQ2 3546 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 LOC102723996A0A087X1L8 192 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 CENPVL1A0A0U1RR11 272 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 EFCAB9A8MZ26 197 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 ZFAND5O76080 213 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 UTS2O95399 124 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 NADKO95544 446 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 LCKP06239 509 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 NGFRP08138 427 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 TBXA2RP21731 343 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 ZNF136P52737 540 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 COPZ1P61923 177 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 ST3GAL4Q11206 333 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 TARDBPQ13148 414 aaKnown RBP eCLIP16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 TMED1Q13445 227 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 EFR3AQ14156 821 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 TIMM50Q3ZCQ8 353 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 KLHL26Q53HC5 615 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC25A30Q5SVS4 291 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 USP43Q70EL4 1123 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 GDF7Q7Z4P5 450 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 ZNF441Q8N8Z8 693 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 DRAXINQ8NBI3 349 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 MINDY2Q8NBR6 621 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 KBTBD8Q8NFY9 601 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 GNPDA2Q8TDQ7 276 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 CHPT1Q8WUD6 406 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 ZHX1-C8orf76Q96EF9 292 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 COX4I2Q96KJ9 171 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 B3GNT4Q9C0J1 378 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 AKIP1Q9NQ31 210 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 MAN2C1Q9NTJ4 1040 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 DNAJB12Q9NXW2 375 aaKnown RBP16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 RPS6KB2Q9UBS0 482 aa16.74■□□□□ 0.27
CCDC88C-203ENST00000389856 AIREO43918 545 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 TPST2O60704 377 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 RAB40ALP0C0E4 278 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC15A1P46059 708 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 CLK1P49759 484 aaKnown RBP16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC26A5P58743 744 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 OR1Q1Q15612 314 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 EXT1Q16394 746 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 LCN10Q6JVE6 187 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 C1orf94Q6P1W5 598 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 PGBD2Q6P3X8 592 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 RNF113BQ8IZP6 322 aaKnown RBP16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 OR8J1Q8NGP2 316 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 HS6ST2Q96MM7 605 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 HHATLQ9HCP6 504 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 EXOSC3Q9NQT5 275 aaKnown RBP16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 CTPS2Q9NRF8 586 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 OSGIN1Q9UJX0 560 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 ERGIC3Q9Y282 383 aa16.73■□□□□ 0.27
CCDC88C-203ENST00000389856 IGHV3-20A0A0C4DH32 117 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms